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Works cited by this work

97 works

Work: Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea

  1. Prodigal: prokaryotic gene recognition and translation initiation site identification

    Doug Hyatt, Gwo-Liang Chen, Philip LoCascio +3

    Article20105 citations
    ABI

  2. An Ecological Overview of Halophytes from the Aralkum Area

    S. W. Breckle

    Chapter20215 citations
    ABI

  3. Assessment of human-induced environmental disaster in the Aral Sea using Landsat satellite images

    Sayed Ishaq Deliry, Zehra Yiğit Avdan, Do Tan Nghi +1

    Article20204 citations
    ABI

  4. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Donovan H. Parks, Michael Imelfort, Connor T. Skennerton +2

    Article20154 citations
    ABI

  5. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

    Dongwan Kang, Feng Li, Edward Kirton +4

    Article20194 citations
    ABI

  6. Going back to the roots: the microbial ecology of the rhizosphere

    Laurent Philippot, Jos M. Raaijmakers, Philippe Lemanceau +1

    Review article20134 citations
    ABI

  7. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4

    Article20174 citations
    ABI

  8. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

    Dinghua Li, Chi-Man Liu, Ruibang Luo +2

    Article20154 citations
    ABI

  9. VSEARCH: a versatile open source tool for metagenomics

    Torbjørn Rognes, Tomáš Flouri, Ben Nichols +2

    Article20164 citations
    ABI

  10. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

    Gabriele Berg, Kornelia Smalla

    Review article20093 citations
    ABI

  11. Bog ecosystems as a playground for plant–microbe coevolution: bryophytes and vascular plants harbour functionally adapted bacteria

    Wisnu Adi Wicaksono, Tomislav Cernava, Christian Berg +1

    Article20213 citations
    ABI

  12. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

    Weizhong Li, Adam Godzik

    Article20063 citations
    ABI

  13. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

    Jaime Huerta‐Cepas, Damian Szklarczyk, Davide Heller +9

    Article20183 citations
    ABI

  14. From Aral Sea to Aralkum: An Ecological Disaster or Halophytes’ Paradise

    Siegmar‐W. Breckle

    Chapter20123 citations
    ABI

  15. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

    Yu‐Wei Wu, Blake A. Simmons, Steven W. Singer

    Article20153 citations
    ABI

  16. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

    Elmar Pruesse, Christian Quast, Katrin Knittel +4

    Article20073 citations
    ABI

  17. Binning metagenomic contigs by coverage and composition

    Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn +7

    Article20143 citations
    ABI

  18. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas +51

    Article20173 citations
    ABI

  19. GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

    Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz +1

    Article20193 citations
    ABI

  20. The importance of the microbiome of the plant holobiont

    Philippe Vandenkoornhuyse, Achim Quaiser, Marie Duhamel +2

    Review article20152 citations
    ABI

  21. Saving seed microbiomes

    Gabriele Berg, Jos M. Raaijmakers

    Review article20182 citations
    ABI

  22. Tomato Seeds Preferably Transmit Plant Beneficial Endophytes

    Alessandro Bergna, Tomislav Cernava, Manuela Rändler +3

    Article20182 citations
    ABI

  23. The Aralkum, a Man-Made Desert on the Desiccated Floor of the Aral Sea (Central Asia): General Introduction and Aims of the Book

    S-W. Breckle, Walter Wucherer

    Chapter20112 citations
    ABI

  24. Bracken: estimating species abundance in metagenomics data

    Jennifer Lu, Florian P. Breitwieser, Peter Thielen +1

    Article20172 citations
    ABI

  25. Primary Successions on the new Aral Seashore

    L. A. Dimeyeva

    Article20072 citations
    ABI