Works cited by this work

61 works

Work: Additional file 3 of Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7
Article201274 citations
ABI
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
Article201469 citations
ABI
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew D. Kearse, Richard Moir, Amy Wilson +11
Article201263 citations
ABI
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba, Guillermo L. Taboada, Ramón Doallo +1
Other201245 citations
ABI
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4
Article202041 citations
ABI
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio +4
Article201737 citations
ABI
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Kazutaka Katoh, John Rozewicki, Kazunori Yamada
Article201729 citations
ABI
REPuter: the manifold applications of repeat analysis on a genomic scale
Stefan Kurtz
Article200127 citations
ABI
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón
Article200926 citations
ABI
Bandage: interactive visualization of de novo genome assemblies
Ryan R. Wick, Mark B. Schultz, Justin Zobel +1
Article201525 citations
ABI
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
Dong Zhang, Fangluan Gao, Ivan Jakovlić +4
Article201925 citations
ABI
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Ivica Letunić, Peer Bork
Article202123 citations
ABI
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
Matthias Meyer, Martin Kircher
Article201021 citations
ABI
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
Susann Wicke, Gerald M. Schneeweiss, Claude W. dePamphilis +2
Article201121 citations
ABI
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich, Sergey Nurk, Dmitry Antipov +13
Article201218 citations
ABI
OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
Marc Lohse, Oliver Drechsel, Sabine Kahlau +1
Article201318 citations
ABI
The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity
Rafaël Govaerts, Eimear Nic Lughadha, Nicholas Black +2
Article202118 citations
ABI
Carpology of the species of Ferula subgen. Merwia (Umbelliferae–Apioideae) and some taxonomic implications
Л.К. Сафина, Т. А. Остроумова, M. G. Pimenov
Article201416 citations
ABI
Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation
Renata Kurzyna‐Młynik, Alexei A. Oskolski, Stephen R. Downie +3
Article200816 citations
ABI
Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA
Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +6
Article201816 citations
ABI
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
Aaron E. Darling, Bob Mau, Frederick R. Blattner +1
Article200415 citations
ABI
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
Chang Liu, Linchun Shi, Yingjie Zhu +4
Article201215 citations
ABI
Ferula asafoetida : Traditional uses and pharmacological activity
Poonam Mahendra, Shradha Bisht
Article201215 citations
ABI
Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
Andan Zhu, Wenhu Guo, Sakshi Gupta +2
Article201515 citations
ABI
Phylogenetic relationships among Dorema , Ferula and Leutea (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences
Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +3
Article201515 citations
ABI

Works cited by this work

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

jModelTest 2: more models, new heuristics and parallel computing

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

REPuter: the manifold applications of repeat analysis on a genomic scale

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Bandage: interactive visualization of <i>de novo</i> genome assemblies

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity

Carpology of the species of <i>Ferula</i> subgen. <i>Merwia</i> (Umbelliferae–Apioideae) and some taxonomic implications

Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation

Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

Ferula asafoetida : Traditional uses and pharmacological activity

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

Phylogenetic relationships among <i>Dorema</i> , <i>Ferula</i> and <i>Leutea</i> (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences