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Phytochrome gene expression studies: PHYE is required for FR-induced expression of PHYA and PHYD suppresses expression of PHYA

Umidjon ShapulatovFaculty of Biology, National University of Uzbekistan, University street 4, 100174 Tashkent, UzbekistanMara MeisenburgLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The NetherlandsMark van HoogdalemBusiness Unit Greenhouse Horticulture, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, The NetherlandsAlexander van HallLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The NetherlandsW. van IeperenHorticulture and Product Physiology, Department of Plant Sciences, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The NetherlandsMaarten WassenaarHorticulture and Product Physiology, Department of Plant Sciences, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The NetherlandsAlexander R. van der KrolLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
ABI

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Abstract Arabidopsis has five phytochrome (PHY) genes for sensing the Red:Far Red (R:FR) ratio in ambient light, of which PHYA has an established role in responses to FR. To study whether and how PHYs may influence each other’s transcription, PHY-Luciferase reporter plants (pPHYA:LUC, pPHYB:LUC, pPHYC:LUC, pPHYD:LUC and pPHYE:LUC) were constructed. Subsequently, reporter lines representative for each PHY were crossed into each of the five single phy- mutant backgrounds. Reporter activities in WT and phy mutant was studied under diurnal mixed (R, B, FR), R, FR or B LED light in seedling or rosette plants. Both pPHYA:LUC and pPHYB:LUC show strong induction under FR. Full FR upregulation of both PHYA and PHYB is dependent on PHYE, identifying PHYE as a novel sensor for FR light responses. Results also show that PHYA expression is strongly suppressed by PHYD. Results were confirmed for expression of endogenous PHYA and PHYB, albeit with different dynamics compared to the LUC reporters. Profiling of pPHYA:LUC and pPHYB:LUC reporters suggest gating of FR responses. Manipulation of PHY expression levels by FR may provide a novel basis for manipulating plant growth in controlled environments.

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