Работы, на которые ссылается эта работа

Работ: 96

Работа: The genomic and bulked segregant analysis of Curcuma alismatifolia revealed its diverse bract pigmentation

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh, Daron M. Standley
Статья2013Цитирований: 70
ABI
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
Статья2014Цитирований: 69
ABI
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin
Статья2009Цитирований: 21
ABI
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen +1
Статья2018Цитирований: 18
ABI
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love, Wolfgang Huber, Simon Anders
Статья2014Цитирований: 14
ABI
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour +18
Статья2011Цитирований: 14
ABI
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg
Статья2012Цитирований: 11
ABI
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Z. Yang
Статья2007Цитирований: 11
ABI
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2
Статья2015Цитирований: 10
ABI
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath
Статья2008Цитирований: 9
ABI
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea, Daehwan Kim, Geo Pertea +2
Статья2016Цитирований: 8
ABI
Fast and accurate long-read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin
Статья2010Цитирований: 7
ABI
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim, Joseph M. Paggi, Chanhee Park +2
Статья2019Цитирований: 7
ABI
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2
Статья2021Цитирований: 7
ABI
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Brian J. Haas, Steven L. Salzberg, Wei Zhu +6
Статья2008Цитирований: 6
ABI
Flavonoids: biosynthesis, biological functions, and biotechnological applications
Marı́a Lorena Falcone Ferreyra, Sebastián P. Rius, Paula Casati
Статья2012Цитирований: 6
ABI
A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers
Guillaume Marçais, Carl Kingsford
Статья2011Цитирований: 6
ABI
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Brian Haas
Статья2003Цитирований: 6
ABI
MYB transcription factors in Arabidopsis
Christian Dubos, Ralf Stracke, Erich Grotewold +3
Обзорная статья2010Цитирований: 5
ABI
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth
Статья2009Цитирований: 5
ABI
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo, Eric Banks, Ryan Poplin +15
Статья2011Цитирований: 4
ABI
Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants
Xin Qiao, Qionghou Li, Hao Yin +5
Статья2019Цитирований: 4
ABI
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
Shujun Ou, Ning Jiang
Статья2017Цитирований: 4
ABI
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4
Статья2017Цитирований: 4
ABI
Gene finding in novel genomes
Ian Korf
Статья2004Цитирований: 3
ABI