Перейти к основному содержанию
AkademIndex

Продукты

Для разработчиков

AkademBaseскороОткрытый API экосистемы
Латиница
← Назад к работе

Работы, на которые ссылается эта работа

Работ: 63

Работа: Whole genome sequencing of Castanea mollissima and molecular mechanisms of sugar and starch synthesis

  1. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Статья2020Цитирований: 41
    ABI

  2. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    Статья2014Цитирований: 14
    ABI

  3. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Статья2011Цитирований: 14
    ABI

  4. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Статья2007Цитирований: 11
    ABI

  5. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

    Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2

    Статья2015Цитирований: 10
    ABI

  6. WGCNA: an R package for weighted correlation network analysis

    Peter Langfelder, Steve Horvath

    Статья2008Цитирований: 9
    ABI

  7. clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

    Guangchuang Yu, Li-Gen Wang, Yanyan Han +1

    Статья2012Цитирований: 8
    ABI

  8. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    Статья2015Цитирований: 7
    ABI

  9. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    Статья2012Цитирований: 7
    ABI

  10. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

    Yupeng Wang, Haibao Tang, Jeremy D. DeBarry +9

    Статья2012Цитирований: 7
    ABI

  11. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    Статья1997Цитирований: 7
    ABI

  12. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Статья2021Цитирований: 7
    ABI

  13. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Статья2015Цитирований: 7
    ABI

  14. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    Статья2008Цитирований: 6
    ABI

  15. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Статья2003Цитирований: 6
    ABI

  16. Minimap2: pairwise alignment for nucleotide sequences

    Heng Li

    Статья2018Цитирований: 5
    ABI

  17. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

    Heng Li

    Препринт2013Цитирований: 5
    ABI

  18. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Статья2017Цитирований: 4
    ABI

  19. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

    Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6

    Статья2022Цитирований: 4
    ABI

  20. DNA sequencing with chain-terminating inhibitors

    Frederick Sanger, S. Nicklen, Alan Coulson

    Статья1977Цитирований: 4
    ABI

  21. NextPolish: a fast and efficient genome polishing tool for long-read assembly

    Jiang Hu, Junpeng Fan, Zongyi Sun +1

    Статья2019Цитирований: 3
    ABI

  22. Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding

    Mario Stanke, Mark Diekhans, Robert Baertsch +1

    Статья2008Цитирований: 3
    ABI

  23. Hybrid <i>de novo</i> genome assembly of Chinese chestnut (<i>Castanea mollissima</i>)

    Yu Xing, Yang Liu, Qing Zhang +10

    Статья2019Цитирований: 3
    ABI

  24. Coming of age: ten years of next-generation sequencing technologies

    Sara Goodwin, John D. McPherson, W. Richard McCombie

    Обзорная статья2016Цитирований: 3
    ABI

  25. Без названия

    ДругоеЦитирований: 2
    ABI