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Работы, на которые ссылается эта работа

Работ: 137

Работа: Phylogenomics provides new insight into the phylogeny and diversification of Asian Lappula (Boraginaceae)

  1. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    Статья2012Цитирований: 74
    ABI

  2. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Статья2013Цитирований: 70
    ABI

  3. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Статья2014Цитирований: 69
    ABI

  4. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Статья2020Цитирований: 41
    ABI

  5. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

    Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler +1

    Статья2014Цитирований: 28
    ABI

  6. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Статья2009Цитирований: 26
    ABI

  7. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    Статья2015Цитирований: 25
    ABI

  8. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Статья2019Цитирований: 25
    ABI

  9. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    Статья2017Цитирований: 24
    ABI

  10. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Статья2014Цитирований: 23
    ABI

  11. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

    Статья2021Цитирований: 23
    ABI

  12. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Статья2020Цитирований: 23
    ABI

  13. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

    Andrew Rambaut, Alexei J. Drummond, Dong Xie +2

    Статья2018Цитирований: 18
    ABI

  14. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Статья2011Цитирований: 14
    ABI

  15. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

    Stéphane Guindon, Jean-François Dufayard, Vincent Lefort +3

    Статья2010Цитирований: 10
    ABI

  16. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    Статья2012Цитирований: 7
    ABI

  17. CPGAVAS2, an integrated plastome sequence annotator and analyzer

    Linchun Shi, Haimei Chen, Mei Jiang +4

    Статья2019Цитирований: 6
    ABI

  18. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Статья2011Цитирований: 6
    ABI

  19. PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

    Robert Lanfear, Paul B. Frandsen, April Wright +2

    Статья2016Цитирований: 4
    ABI

  20. phytools: an R package for phylogenetic comparative biology (and other things)

    Liam J. Revell

    Статья2011Цитирований: 4
    ABI

  21. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

    T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz

    Статья2020Цитирований: 4
    ABI

  22. Evolution of Gene Duplication in Plants

    Nicholas Panchy, Melissa D. Lehti‐Shiu, Shin‐Han Shiu

    Обзорная статья2016Цитирований: 3
    ABI

  23. Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

    María Cristina Acosta, Andrea C. Premoli

    Статья2009Цитирований: 3
    ABI

  24. The Chromosome Counts Database (<scp>CCDB</scp>) – a community resource of plant chromosome numbers

    Anna Rice, Lior Glick, Shiran Abadi +6

    Статья2014Цитирований: 3
    ABI

  25. Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae)

    Judith Fehrer, Birgit Gemeinholzer, Jindřich Chrtek +1

    Статья2006Цитирований: 3
    ABI