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Работы, на которые ссылается эта работа

Работ: 114

Работа: Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov., named following the rules of SeqCode

  1. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    Статья2017Цитирований: 24
    ABI

  2. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Статья2014Цитирований: 23
    ABI

  3. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Статья2020Цитирований: 23
    ABI

  4. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    Статья2012Цитирований: 18
    ABI

  5. DADA2: High-resolution sample inference from Illumina amplicon data

    Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen +3

    Статья2016Цитирований: 15
    ABI

  6. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

    Stephen F. Altschul

    Обзорная статья1997Цитирований: 14
    ABI

  7. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

    Christian Quast, Elmar Pruesse, Pelin Yilmaz +5

    Статья2012Цитирований: 12
    ABI

  8. Cutadapt removes adapter sequences from high-throughput sequencing reads

    Marcel Martin

    Статья2011Цитирований: 11
    ABI

  9. Ultrafast Approximation for Phylogenetic Bootstrap

    Bùi Quang Minh, Minh Anh Nguyen, A. von Haeseler

    Статья2013Цитирований: 9
    ABI

  10. GTDB-Tk v2: memory friendly classification with the genome taxonomy database

    Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz +1

    Статья2022Цитирований: 5
    ABI

  11. Salmon provides fast and bias-aware quantification of transcript expression

    Rob Patro, Geet Duggal, Michael I. Love +2

    Статья2017Цитирований: 5
    ABI

  12. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

    Ross Overbeek, Robert Olson, Gordon D. Pusch +11

    Статья2013Цитирований: 4
    ABI

  13. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Donovan H. Parks, Michael Imelfort, Connor T. Skennerton +2

    Статья2015Цитирований: 4
    ABI

  14. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

    Dongwan Kang, Feng Li, Edward Kirton +4

    Статья2019Цитирований: 4
    ABI

  15. Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity

    Dongwook Kim, Sein Park, Jongsik Chun

    Статья2021Цитирований: 4
    ABI

  16. RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

    Thomas Brettin, James J. Davis, Terry Disz +13

    Статья2015Цитирований: 3
    ABI

  17. NCBI prokaryotic genome annotation pipeline

    Tatiana Tatusova, Michael DiCuccio, Azat Badretdin +7

    Статья2016Цитирований: 3
    ABI

  18. Bergey's Manual of Systematics of Archaea and Bacteria

    Книга2015Цитирований: 3
    ABI

  19. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

    Donovan H. Parks, Maria Chuvochina, Christian Rinke +3

    Статья2021Цитирований: 3
    ABI

  20. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

    Yu‐Wei Wu, Blake A. Simmons, Steven W. Singer

    Статья2015Цитирований: 3
    ABI

  21. Binning metagenomic contigs by coverage and composition

    Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn +7

    Статья2014Цитирований: 3
    ABI

  22. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas +51

    Статья2017Цитирований: 3
    ABI

  23. Analysis of 16S rRNA Primer Systems for Profiling of Thermophilic Microbial Communities

    Alexander Y. Merkel, I. Yu. Tarnovetskii, Olga A. Podosokorskaya +1

    Статья2019Цитирований: 3
    ABI

  24. A complete domain-to-species taxonomy for Bacteria and Archaea

    Donovan H. Parks, Maria Chuvochina, Pierre-Alain Chaumeil +3

    Статья2020Цитирований: 3
    ABI

  25. IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies

    Ilias Lagkouvardos, Divya Joseph, Martin Kapfhammer +4

    Статья2016Цитирований: 2
    ABI