Работы, на которые ссылается эта работа

Работ: 121

Работа: High-quality genome of Oreocharis mileensis (Gesneriaceae) provides insights into the adaptation and conservation of highly threatened species in karst region

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
Статья2014Цитирований: 69
ABI
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler +1
Статья2014Цитирований: 28
ABI
WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas
Stephen E. Fick, Robert J. Hijmans
Статья2017Цитирований: 25
ABI
The Sequence Alignment/Map format and SAMtools
Heng Li, Bob Handsaker, Alec Wysoker +7
Статья2009Цитирований: 22
ABI
The variant call format and VCFtools
Petr Danecek, Adam Auton, Gonçalo R. Abecasis +10
Статья2011Цитирований: 19
ABI
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen +1
Статья2018Цитирований: 18
ABI
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
Fumio Tajima
Статья1989Цитирований: 16
ABI
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown +8
Статья2007Цитирований: 15
ABI
Ancient Admixture in Human History
Nick Patterson, Priya Moorjani, Yontao Luo +6
Статья2012Цитирований: 14
ABI
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink, Chao Xie, Daniel H. Huson
Статья2014Цитирований: 12
ABI
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Z. Yang
Статья2007Цитирований: 11
ABI
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2
Статья2015Цитирований: 10
ABI
Second-generation PLINK: rising to the challenge of larger and richer datasets
Christopher Chang, Carson C. Chow, Laurent CAM Tellier +3
Статья2015Цитирований: 9
ABI
ANGSD: Analysis of Next Generation Sequencing Data
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen
Статья2014Цитирований: 8
ABI
Inference of Population Structure using Dense Haplotype Data
Daniel J. Lawson, Garrett Hellenthal, Simon Myers +1
Статья2012Цитирований: 7
ABI
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu +3
Статья2015Цитирований: 7
ABI
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Todd M. Lowe, Sean R. Eddy
Статья1997Цитирований: 7
ABI
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2
Статья2021Цитирований: 7
ABI
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
Joseph K. Pickrell, Jonathan K. Pritchard
Статья2012Цитирований: 6
ABI
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Brian J. Haas, Steven L. Salzberg, Wei Zhu +6
Статья2008Цитирований: 6
ABI
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Brian Haas
Статья2003Цитирований: 6
ABI
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
Статья2018Цитирований: 5
ABI
OrthoFinder: phylogenetic orthology inference for comparative genomics
David Emms, Steven Kelly
Статья2019Цитирований: 5
ABI
InterProScan 5: genome-scale protein function classification
Philip Jones, David Binns, Hsin-Yu Chang +14
Статья2014Цитирований: 5
ABI
Population Genetic Consequences of Small Population Size: Implications for Plant Conservation
Norman C. Ellstrand, Diane R. Elam
Статья1993Цитирований: 5
ABI