A class-wide phylogenetic assessment of Dothideomycetes
Conrad L. SchochNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.AP.W. CrousCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands;J.Z. GroenewaldCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands;E. W. A. BoehmDepartment of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.;Treena I. BurgessBiological Sciences, Murdoch University, Murdoch, 6150, Australia;J. de GruyterCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands;Sybren de HoogCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands;L. J. DixonUSDA-ARS Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, U.S.A.;Martín GrubeInstitute of Plant Sciences, Karl-Franzens-University of Graz, Austria;Cécile GueidanCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, Netherlands;Y HaradaFaculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan;Satoshi HatakeyamaFaculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan;Kazuyuki HirayamaFaculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan;Tsuyoshi HosoyaNational Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Ibaraki 305-0005, Japan;Sabine M. HuhndorfDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;Kevin D. HydeSchool 17 of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand;E. B. Gareth JonesBioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand;Jan KohlmeyerInstitute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.;Åsa KruysDepartment of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden;Y. M. LiRobert LückingDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;H. Thorsten LumbschDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;Ludmila MarvanováCzech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Tvrdého 14, Brno CZ-602 00, Czech Republic;Joelle MbatchouDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;AnalysisDavid McVayDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.;Andrew N. MillerIllinois Natural History Survey, University of Illinois, 1816 South Oak St., Champaign, IL, 61820, U.S.A.;George K. MugambiNational Museums of Kenya, Botany Dept., P.O. Box 45166, 00100, Nairobi, Kenya;Lucía MuggiaInstitute of Plant Sciences, Karl-Franzens-University of Graz, Austria;Matthew P. NelsenDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;Peggy B. NelsonUniversity of Minnesota, Ecology, Evolution, and Behavior, 100 Ecology Building, St. Paul, MN 55108, U.S.A.;C. Alisha OwensbyDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 U.S.A.;Alan J. L. PhillipsCentro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Quinta da Torre, 2829-516 Caparica, Portugal;Souwalak PhongpaichitDepartment of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand;Stephen B. PointingDivision of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China; 25 CIRAD/PIAF, Université Blaise Pascal, Bâtiment Biologie Végétale Recherche, 24 avenue des Landais, BP 80026, 63177 Aubière, France; 26 Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.; 27 Department of Biological Sciences, University of Illinois-Chicago, 845 West Taylor Street (MC 066), Chicago, Illinois 60607, U.S.A.; 28 Departamento de Ingeniería y Ciencia de los Materiales, Escuela Técnica Superior de Ingenieros Industriales, Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain; 29 DECOS, Università degli Studi della Tuscia, Largo dell'Università, Viterbo, Italy; 30 Fungus/Mushroom Resource and Research Center, Tottori University, Minami 4-101, Koyama, Tottori, Tottori 680-8553 Japan; 31 Forestry and Agricultural Biotechnology Institute (FABI), Centre of Excellence in Tree Health Biotechnology, Department of Genetics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, 0002, South Africa; 32 ARC -Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa; 33 International Fungal Research Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. ChinaValérie Pujade‐RenaudHuzefa A. RajaEimy Rivas PlataDepartment of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.;Barbara RobbertseNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.;Constantino RuibalJariya SakayarojBioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand;Teruo SanoFaculty of Agriculture and Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan;Laura SelbmannCarol A. ShearerTakashi ShirouzuBernard SlippersSatinee SuetrongDepartment of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand;Kazuaki TanakaUniversity of Hong KongBrigitte Volkmann‐KohlmeyerMichael J. WingfieldAlan R. WoodJ.H.C. WoudenbergHiroaki YonezawaY. ZhangJoseph W. Spatafora
2009en
ABI
Аннотация
We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.
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