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Electrostatic Potentials and Free Energies of Solvation of Polar and Charged Molecules

Gerhard HummerTheoretical Division, MS K710, Los Alamos National Laboratory, Los Alamos, New Mexico 87545Lawrence R. PrattTheoretical Division, MS K710, Los Alamos National Laboratory, Los Alamos, New Mexico 87545Angel E. Garcı́aTheoretical Division, MS K710, Los Alamos National Laboratory, Los Alamos, New Mexico 87545B. J. BerneDepartment of Chemistry and Center for Biomolecular Simulation, Columbia University, New York, New York 10027Steven W. RickFrederick Cancer Research and Development Center, National Cancer Institute, Frederick, Maryland 21702
1997en
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Аннотация

Theories of solvation free energies often involve electrostatic potentials at the position of a solute charge. Simulation calculations that apply cutoffs and periodic boundary conditions based on molecular centers result in center-dependent contributions to electrostatic energies due to a systematic sorting of charges in radial shells. This sorting of charges induces a surface-charge density at the cutoff sphere or simulation-box boundary that depends on the choice of molecular centers. We identify a simple solution that gives correct, center-independent results, namely the radial integration of charge densities. Our conclusions are illustrated for a Lennard-Jones solute in water. The present results can affect the parametrization of force fields.

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Цитирований: 2Использованных источников: 0