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Genetic diversity of <i>mitochondrial cytochrome b</i> gene in Chinese native buffalo

Chuzhao LeiShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A & F University, Yangling, ChinaC. M. ZhangShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, ChinaS. WeiningAgronogy College, Northwest A & F University, Yangling, Shaanxi 712100, ChinaMichael G. CampanaDepartment of Archaeology, University of Cambridge, Cambridge, CB2 1RD, UKMim A. BowerGlyn Daniel Laboratory for Archaeogenetics, McDonald Institute for Archaeological Research, Downing Street, Cambridge CB2 3ER, UKXinyu ZhangShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, ChinaL. LiuDepartment of East Asian Languages and Cultures, Stanford University, CA 94305, USAXianyong LanShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, ChinaH. ChenShaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A & F University, Yangling, Shaanxi 712100, China
2011en
ABI

Аннотация

The origins of the domestic water buffalo remain contentious. To better understand the origins of Chinese water buffalo, we sequenced the complete mitochondrial cytochrome b (MT-CYB) gene from 270 individuals representing 13 Chinese domestic swamp buffalo populations. We found genetic evidence of introgression of river buffalo into Chinese swamp buffalo herds. Swamp buffalo haplotypes can be divided into two highly divergent lineages (A and B), suggesting that Chinese native swamp buffalo have two maternal origins. We found that the A→G transition in the buffalo MT-CYB gene stop codon resulted in buffalo haplotypes being terminated by one of two stop codons: AGA or AGG. AGA is common to river buffalo and lineage A of swamp buffalo, while AGG is specific to lineage B of swamp buffalo. Lineage A appears to have been domesticated in China. Further genetic evidence is required to clarify the origins of lineage B.

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