Статья

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools

Manish SudSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USAEoin FahySan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USADawn CotterSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USAKenan AzamSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USAIlango VadiveluSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USACharles BurantUniversity of Michigan, 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105, USAArthur S. EdisonUniversity of Florida, 2250 Shealy Drive, Gainesville, FL 32608, USAOliver FiehnUniversity of California, Davis, 451 Health Sciences Dr, Davis, CA 95616, USARichard M. HigashiUniversity of Kentucky, 789 S. Limestone, 521 Biopharm Bldg, Lexington, KY 40536, USAK. Sreekumaran NairMayo Clinic, 200 First street SW, Rochester, MN 55902, USASusan SumnerRTI International, 3040 Cornwallis Rd, Research Triangle Park, NC 27709, USAShankar SubramaniamSan Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USA Departments of Bioengineering, Computer Science and Engineering, Cellular and Molecular Medicine, and Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA [email protected]

2015en

ABI

Аннотация

The Metabolomics Workbench, available at www.metabolomicsworkbench.org, is a public repository for metabolomics metadata and experimental data spanning various species and experimental platforms, metabolite standards, metabolite structures, protocols, tutorials, and training material and other educational resources. It provides a computational platform to integrate, analyze, track, deposit and disseminate large volumes of heterogeneous data from a wide variety of metabolomics studies including mass spectrometry (MS) and nuclear magnetic resonance spectrometry (NMR) data spanning over 20 different species covering all the major taxonomic categories including humans and other mammals, plants, insects, invertebrates and microorganisms. Additionally, a number of protocols are provided for a range of metabolite classes, sample types, and both MS and NMR-based studies, along with a metabolite structure database. The metabolites characterized in the studies available on the Metabolomics Workbench are linked to chemical structures in the metabolite structure database to facilitate comparative analysis across studies. The Metabolomics Workbench, part of the data coordinating effort of the National Institute of Health (NIH) Common Fund's Metabolomics Program, provides data from the Common Fund's Metabolomics Resource Cores, metabolite standards, and analysis tools to the wider metabolomics community and seeks data depositions from metabolomics researchers across the world.

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Идентификаторы

DOI: 10.1093/nar/gkv1042

Цитирования и источники

Цитирований: 2Использованных источников: 0

Показатели — AkademScholar