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Manganese matere bonds in biological systems: PDB inspection and DFT calculations

Sergi BurgueraDepartment of Chemistry, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, SpainAkshay Kumar SahuHomi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, IndiaMichael Jordan Chávez RomeroDepartment of Chemistry, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, SpainHimansu S. BiswalHomi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, IndiaAntonio BauzáDepartment of Chemistry, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain
2024en
ABI

Аннотация

A Protein Data Bank (PDB) survey has revealed noncovalent contacts involving Mn centres and protein residues. Their geometrical features are in line with the interaction between low electron density sites located along the Mn-O/N coordination bonds (σ-holes) and the lone pairs belonging to TYR, SER or HIS residues, known as a matere bond (MaB). Calculations at the PBE0-D3/def2-TZVP level of theory were used to investigate the strength and shed light on the physical nature of the interaction. We expect the results presented herein will be useful for those scientists working in the fields of bioinorganic chemistry, particulary in protein-metal docking, by providing new insights into transition metal⋯Lewis base interactions as well as a retrospective point of view to further understand the structural and functional implications of this key transition metal ion.

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