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Neandertal and Denisovan DNA from Pleistocene sediments

Viviane SlonDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyCharlotte HopfeDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyClemens L. WeißResearch Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, GermanyFabrizio MafessoniDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyMarco de la Rasilla VivesÁrea de Prehistoria, Department of History, Universidad de Oviedo, Calle Teniente Alfonso Martínez s/n, 33011 Oviedo, SpainCarles Lalueza‐FoxInstitute of Evolutionary Biology, Universitat Pompeu Fabra–Consejo Superior de Investigaciones Científicas (UPF-CSIC), 08003 Barcelona, SpainAntonio RosasDepartamento de Paleobiología, Museo Nacional de Ciencias Naturales, CSIC, 28006 Madrid, SpainMarie SoressiDepartment of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyMonika V. KnulFaculty of Science and Technology, Bournemouth University, Poole, Dorset, UKRebecca MillerService de Préhistoire, Université de Liège, 4000 Liège, BelgiumJohn R. StewartFaculty of Science and Technology, Bournemouth University, Poole, Dorset, UKА. П. ДеревянкоAltai State University, Barnaul, RU-656049, RussiaZenobia JacobsAustralian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales 2522, AustraliaBo LiCentre for Archaeological Science, School of Earth and Environmental Sciences, University of Wollongong, Wollongong, New South Wales 2522, AustraliaRichard G. RobertsAustralian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales 2522, AustraliaM.V. ShunkovInstitute of Archaeology and Ethnography, Russian Academy of Sciences, Siberian Branch, Novosibirsk, RU-630090, RussiaHenry de LumleyCentre Européen de Recherches Préhistoriques de Tautavel, 66720 Tautavel, FranceChristian PerrenoudCentre Européen de Recherches Préhistoriques de Tautavel, 66720 Tautavel, FranceIvan GušićAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, CroatiaŽeljko KućanAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, CroatiaPavao RudanAnthropology Center of the Croatian Academy of Sciences and Arts, 10000 Zagreb, CroatiaAyinuer Aximu‐PetriDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyElena EsselDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanySarah NagelDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyBirgit NickelDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyAnna SchmidtDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyKay PrüferDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyJanet KelsoDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyHernán A. BurbanoResearch Group for Ancient Genomics and Evolution, Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, GermanySvante PääboDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, GermanyMatthias MeyerDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany
2017en
ABI

Аннотация

Although a rich record of Pleistocene human-associated archaeological assemblages exists, the scarcity of hominin fossils often impedes the understanding of which hominins occupied a site. Using targeted enrichment of mitochondrial DNA, we show that cave sediments represent a rich source of ancient mammalian DNA that often includes traces of hominin DNA, even at sites and in layers where no hominin remains have been discovered. By automation-assisted screening of numerous sediment samples, we detected Neandertal DNA in eight archaeological layers from four caves in Eurasia. In Denisova Cave, we retrieved Denisovan DNA in a Middle Pleistocene layer near the bottom of the stratigraphy. Our work opens the possibility of detecting the presence of hominin groups at sites and in areas where no skeletal remains are found.

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