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Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

Víctor J. CarriónDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsJuan E. Pérez‐JaramilloDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsViviane CordovezDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsVittorio TracannaBioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, NetherlandsMattias de HollanderDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsDaniel Ruiz-BuckDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsLucas William MendesCell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of Sao Paulo (USP), Piracicaba, BrazilWilfred F. J. van IJckenErasmus MC, University Medical Center Rotterdam, Department of Cell Biology, Center for Biomics, 3025 CN Rotterdam, NetherlandsRuth Gomez-ExpositoDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsSomayah S. ElsayedInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, NetherlandsPrarthana MohanrajuLaboratory of Microbiology, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, NetherlandsAdini Qisthi ArifahLaboratory of Microbiology, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, NetherlandsJohn van der OostLaboratory of Microbiology, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, NetherlandsJoseph N. PaulsonRodrigo MendesLaboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, Embrapa Environment, Rodovia SP 340, Km 127.5, 13820-000 Jaguariúna, BrazilGilles P. van WezelDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, NetherlandsMarnix H. MedemaBioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, NetherlandsJos M. RaaijmakersDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, Netherlands
2019en
ABI

Аннотация

Protecting plants from the inside out Some soils show a remarkable ability to suppress disease caused by plant pathogens, an ability that is attributed to plant-associated microbiota. Carrión et al. investigated the role of endophytes, the intimate microbial community found within roots, in fungal disease suppression (see the Perspective by Tringe). The wilt fungus Rhizoctonia solani infects sugar beets, whereupon transcriptional analysis shows that several bacterial endophyte species activate biosynthetic gene clusters to cause disease suppression. These organisms produce antifungal effectors, including enzymes that can digest fungal cell walls, and secondary metabolites, including phenazines, polyketides, and siderophores, which may contribute to the antifungal phenotype. Science , this issue p. 606 ; see also p. 568

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