Статья

The Newick utilities: high-throughput phylogenetic tree processing in the U<scp>nix</scp> shell

Thomas Junier1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UKEvgeny M. Zdobnov1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK

2010en

ABI

Аннотация

SUMMARY: We present a suite of Unix shell programs for processing any number of phylogenetic trees of any size. They perform frequently-used tree operations without requiring user interaction. They also allow tree drawing as scalable vector graphics (SVG), suitable for high-quality presentations and further editing, and as ASCII graphics for command-line inspection. As an example we include an implementation of bootscanning, a procedure for finding recombination breakpoints in viral genomes. AVAILABILITY: C source code, Python bindings and executables for various platforms are available from http://cegg.unige.ch/newick_utils. The distribution includes a manual and example data. The package is distributed under the BSD License. CONTACT: [email protected]

Перевод пока недоступен

Идентификаторы

DOI: 10.1093/bioinformatics/btq243

Цитирования и источники

Цитирований: 2Использованных источников: 0

Показатели — AkademScholar