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Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study

Himansu S. BiswalSchool of Chemical Sciences National Institute of Science Education and Research (NISER) PO-Bhimpur-Padanpur, Via-Jatni, District-Khurda Bhubaneswar IndiaAkshay Kumar SahuSchool of Chemical Sciences National Institute of Science Education and Research (NISER) PO-Bhimpur-Padanpur, Via-Jatni, District-Khurda Bhubaneswar IndiaBartomeu GalmésDepartament de Química Universitat de les Illes Balears Crta de Valldemossa km 7.5 07122 Palma de Mallorca SpainAntonio FronteraDepartament de Química Universitat de les Illes Balears Crta de Valldemossa km 7.5 07122 Palma de Mallorca SpainDeepak ChopraDepartment of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462066 Madhya Pradesh India
2021en
ABI

Аннотация

Abstract The importance of selenium‐centered noncovalent chalcogen bonds represented as Se⋅⋅⋅A (A=O/S) has been explored for short directional contacts in small molecules and proteins. In addition, S⋅⋅⋅O centered contacts have been analyzed. Computational analyses involving the quantitative assessment of the associated energetics, the molecular electrostatic potentials (MEP), and electron density derived topological parameters, namely, quantum theory of atom in molecules (QTAIM) analyses, and NBO (natural bond orbital) based calculations, have been performed to unequivocally establish the strength, stability, and attractive role of chalcogen bonds in the solid‐state. This investigation has been performed in molecules from both the Cambridge Structural Database (CSD) and Protein Data Bank (PDB). Thus futuristic materials may be designed keeping in mind the significance of these interactions, including their relevance in biology.

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