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Работы, на которые ссылается эта работа

Работ: 60

Работа: Integrative multi-omics analysis traces the divergent evolution of Chinese and Vietnamese Cinnamon and elucidates the biosynthetic pathway of cinnamaldehyde derivatives

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Статья2013Цитирований: 70
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Статья2014Цитирований: 69
    ABI

  3. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Статья2009Цитирований: 26
    ABI

  4. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Статья2019Цитирований: 25
    ABI

  5. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Статья2014Цитирований: 23
    ABI

  6. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Статья2020Цитирований: 23
    ABI

  7. Fast model-based estimation of ancestry in unrelated individuals

    David H. Alexander, John Novembre, Kenneth Lange

    Статья2009Цитирований: 19
    ABI

  8. The variant call format and VCFtools

    Petr Danecek, Adam Auton, Gonçalo R. Abecasis +10

    Статья2011Цитирований: 19
    ABI

  9. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Статья2007Цитирований: 11
    ABI

  10. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

    Aaron McKenna, Matthew G. Hanna, Eric Banks +8

    Статья2010Цитирований: 9
    ABI

  11. Second-generation PLINK: rising to the challenge of larger and richer datasets

    Christopher Chang, Carson C. Chow, Laurent CAM Tellier +3

    Статья2015Цитирований: 9
    ABI

  12. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    Статья2015Цитирований: 7
    ABI

  13. The domestication and evolutionary ecology of apples

    Amandine Cornille, Tatiana Giraud, M.J.M. Smulders +2

    Обзорная статья2013Цитирований: 7
    ABI

  14. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Статья2021Цитирований: 7
    ABI

  15. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Статья2015Цитирований: 7
    ABI

  16. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Статья2011Цитирований: 6
    ABI

  17. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Статья2003Цитирований: 6
    ABI

  18. OrthoFinder: phylogenetic orthology inference for comparative genomics

    David Emms, Steven Kelly

    Статья2019Цитирований: 5
    ABI

  19. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    Статья2017Цитирований: 4
    ABI

  20. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

    T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz

    Статья2020Цитирований: 4
    ABI

  21. Genomic variation in 3,010 diverse accessions of Asian cultivated rice

    Wensheng Wang, Ramil Mauleon, Zhiqiang Hu +68

    Статья2018Цитирований: 4
    ABI

  22. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Статья2017Цитирований: 4
    ABI

  23. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Neva C. Durand, Muhammad S. Shamim, Ido Machol +4

    Статья2016Цитирований: 3
    ABI

  24. PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

    Chi Zhang, Shan‐Shan Dong, Junyang Xu +2

    Статья2018Цитирований: 2
    ABI

  25. Crop genetic erosion: understanding and responding to loss of crop diversity

    Colin K. Khoury, Stephen B. Brush, Denise E. Costich +12

    Обзорная статья2021Цитирований: 2
    ABI