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Иш: Phylogenomics provides new insight into the phylogeny and diversification of Asian Lappula (Boraginaceae)

  1. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    Мақола201274 иқтибос
    ABI

  2. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Мақола201370 иқтибос
    ABI

  3. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Мақола201469 иқтибос
    ABI

  4. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Мақола202041 иқтибос
    ABI

  5. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

    Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler +1

    Мақола201428 иқтибос
    ABI

  6. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Мақола200926 иқтибос
    ABI

  7. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    Мақола201525 иқтибос
    ABI

  8. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Мақола201925 иқтибос
    ABI

  9. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    Мақола201724 иқтибос
    ABI

  10. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Мақола201423 иқтибос
    ABI

  11. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

    Мақола202123 иқтибос
    ABI

  12. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Мақола202023 иқтибос
    ABI

  13. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

    Andrew Rambaut, Alexei J. Drummond, Dong Xie +2

    Мақола201818 иқтибос
    ABI

  14. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Мақола201114 иқтибос
    ABI

  15. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

    Stéphane Guindon, Jean-François Dufayard, Vincent Lefort +3

    Мақола201010 иқтибос
    ABI

  16. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    Мақола20127 иқтибос
    ABI

  17. CPGAVAS2, an integrated plastome sequence annotator and analyzer

    Linchun Shi, Haimei Chen, Mei Jiang +4

    Мақола20196 иқтибос
    ABI

  18. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Мақола20116 иқтибос
    ABI

  19. PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

    Robert Lanfear, Paul B. Frandsen, April Wright +2

    Мақола20164 иқтибос
    ABI

  20. phytools: an R package for phylogenetic comparative biology (and other things)

    Liam J. Revell

    Мақола20114 иқтибос
    ABI

  21. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

    T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz

    Мақола20204 иқтибос
    ABI

  22. Evolution of Gene Duplication in Plants

    Nicholas Panchy, Melissa D. Lehti‐Shiu, Shin‐Han Shiu

    Шарҳ мақола20163 иқтибос
    ABI

  23. Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

    María Cristina Acosta, Andrea C. Premoli

    Мақола20093 иқтибос
    ABI

  24. The Chromosome Counts Database (<scp>CCDB</scp>) – a community resource of plant chromosome numbers

    Anna Rice, Lior Glick, Shiran Abadi +6

    Мақола20143 иқтибос
    ABI

  25. Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae)

    Judith Fehrer, Birgit Gemeinholzer, Jindřich Chrtek +1

    Мақола20063 иқтибос
    ABI