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Иш: Pangenome-wide characterization of the TCP gene family and its potential role in regulating adventitious shoot regeneration in apple

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler +1
Мақола201428 иқтибос
ABI
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón
Мақола200926 иқтибос
ABI
The Sequence Alignment/Map format and SAMtools
Heng Li, Bob Handsaker, Alec Wysoker +7
Мақола200922 иқтибос
ABI
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar
Мақола200418 иқтибос
ABI
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen +1
Мақола201818 иқтибос
ABI
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim, Ben Langmead, Steven L. Salzberg
Мақола20157 иқтибос
ABI
The genome of the domesticated apple (Malus × domestica Borkh.)
Riccardo Velasco, Andrey Zharkikh, Jason P. Affourtit +83
Мақола20105 иқтибос
ABI
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Yi Zheng, Jiao Chen, Honghe Sun +10
Бошқа20164 иқтибос
ABI
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Wensheng Wang, Ramil Mauleon, Zhiqiang Hu +68
Мақола20184 иқтибос
ABI
TCP genes: a family snapshot ten years later
Mar Martín‐Trillo, Pilar Cubas
Шарҳ мақола20093 иқтибос
ABI
ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
Zhang Zhang, Jingfa Xiao, Jiayan Wu +4
Мақола20123 иқтибос
ABI
PlantRegMap: charting functional regulatory maps in plants
Feng Tian, De-Chang Yang, Yu-Qi Meng +2
Мақола20193 иқтибос
ABI
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao, Gordon K. Smyth, Wei Shi
Мақола20133 иқтибос
ABI
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining
Chengjie Chen, Ya Wu, Jiawei Li +8
Мақола20233 иқтибос
ABI
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang, Yubin Zhang, Zhang Zhang +2
Мақола20102 иқтибос
ABI
Repbase Update, a database of eukaryotic repetitive elements
Jerzy Jurka, Vladimir V. Kapitonov, Adam Pavlı́ček +3
Шарҳ мақола20052 иқтибос
ABI
The conserved domain database in 2023
Jiyao Wang, Farideh Chitsaz, Myra K. Derbyshire +12
Мақола20222 иқтибос
ABI
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
Tianzhi Wu, Erqiang Hu, Shuangbin Xu +11
Мақола20212 иқтибос
ABI
The<i>Arabidopsis thaliana</i>TCP transcription factors: A broadening horizon beyond development
Shutian Li
Шарҳ мақола20152 иқтибос
ABI
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David Emms, Steven Kelly
Мақола20152 иқтибос
ABI
TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis
Martin Kieffer, Vera Master, Richard Waites +1
Мақола20112 иқтибос
ABI
Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development
José Antonio Aguilar-Martínez, Neelima Sinha
Мақола20132 иқтибос
ABI
The evolution of apical dominance in maize
John Doebley, Adrian O. Stec, Lauren Hubbard
Мақола19972 иқтибос
ABI
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell, Brian A. Williams, Geo Pertea +6
Мақола20102 иқтибос
ABI
TCP factors: new kids on the signaling block
Michaël Nicolas, Pilar Cubas
Шарҳ мақола20162 иқтибос
ABI