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Иш: The effect of cysteine oxidation on conformational changes of SARS-CoV-2 spike protein using atomistic simulations

  1. VMD: Visual molecular dynamics

    William Humphrey, Andrew Dalke, Klaus Schulten

    Мақола199677 иқтибос
    ABI

  2. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

    M Abraham, Teemu J. Murtola, Roland Schulz +4

    Мақола201530 иқтибос
    ABI

  3. Polymorphic transitions in single crystals: A new molecular dynamics method

    Michele Parrinello, A. Rahman

    Мақола198127 иқтибос
    ABI

  4. Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems

    Tom Darden, Darrin M. York, Lee G. Pedersen

    Мақола199316 иқтибос
    ABI

  5. A smooth particle mesh Ewald method

    Ulrich Essmann, L. Perera, Max L. Berkowitz +3

    Мақола199512 иқтибос
    ABI

  6. Chemical modification of amino acids by atmospheric-pressure cold plasma in aqueous solution

    Eisuke Takai, Tsuyoshi Kitamura, Junpei Kuwabara +6

    Мақола201412 иқтибос
    ABI

  7. The Nose–Hoover thermostat

    D.J. Evans, Brad Lee Holian

    Мақола198511 иқтибос
    ABI

  8. Oxidative damage to hyaluronan–CD44 interactions as an underlying mechanism of action of oxidative stress-inducing cancer therapy

    Maksudbek Yusupov, Angela Privat‐Maldonado, Rodrigo M. Cordeiro +5

    МақолаProteoglycans and glycosaminoglycans researchRedox Biology202110 иқтибос
    ABI

  9. Oxidation destabilizes toxic amyloid beta peptide aggregation

    Jamoliddin Razzokov, Maksudbek Yusupov, Annemie Bogaerts

    Мақола201910 иқтибос
    ABI

  10. THE weighted histogram analysis method for free‐energy calculations on biomolecules. I. The method

    Shankar Kumar, John M. Rosenberg, Djamal Bouzida +2

    Мақола199210 иқтибос
    ABI

  11. Impact of plasma oxidation on structural features of human epidermal growth factor

    Maksudbek Yusupov, Jan‐Wilm Lackmann, Jamoliddin Razzokov +3

    Мақола20189 иқтибос
    ABI

  12. Oxidation of Innate Immune Checkpoint CD47 on Cancer Cells with Non-Thermal Plasma

    Abraham Lin, Jamoliddin Razzokov, Hanne Verswyvel +7

    МақолаPlasma Applications and DiagnosticsCancers20219 иқтибос
    ABI

  13. Umbrella sampling

    Johannes Kästner

    Мақола20118 иқтибос
    ABI

  14. A molecular dynamics method for simulations in the canonical ensemble

    Shūichi Nosé

    Мақола19848 иқтибос
    ABI

  15. Canonical dynamics: Equilibrium phase-space distributions

    William G. Hoover

    Мақола19858 иқтибос
    ABI

  16. Interaction of Atmospheric-Pressure Air Microplasmas with Amino Acids as Fundamental Processes in Aqueous Solution

    Renwu Zhou, Rusen Zhou, Jinxing Zhuang +5

    Мақола20167 иқтибос
    ABI

  17. A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster

    Jasper Fuk‐Woo Chan, Shuofeng Yuan, Kin‐Hang Kok +18

    Мақола20207 иқтибос
    ABI

  18. Hydroxyl Radical-Mediated Modification of Proteins as Probes for Structural Proteomics

    Guozhong Xu, Mark R. Chance

    Шарҳ мақола20076 иқтибос
    ABI

  19. CHARMM‐GUI: A web‐based graphical user interface for CHARMM

    Sunhwan Jo, Taehoon Kim, Vidyashankara Iyer +1

    Мақола20086 иқтибос
    ABI

  20. The effect of reactive oxygen and nitrogen species on the structure of cytoglobin: A potential tumor suppressor

    Joey De Backer, Jamoliddin Razzokov, Dietmar Hammerschmid +10

    Мақола20185 иқтибос
    ABI

  21. Transport of Reactive Oxygen and Nitrogen Species across Aquaporin: A Molecular Level Picture

    Maksudbek Yusupov, Jamoliddin Razzokov, Rodrigo M. Cordeiro +1

    Мақола20195 иқтибос
    ABI

  22. Effect of oxidative stress on cystine transportation by xC‾ antiporter

    Maryam Ghasemitarei, Maksudbek Yusupov, Jamoliddin Razzokov +2

    Мақола20195 иқтибос
    ABI

  23. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

    Daniel Wrapp, Nianshuang Wang, Kizzmekia S. Corbett +5

    Мақола20205 иқтибос
    ABI

  24. Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models

    Pär Bjelkmar, Per Larsson, Michel A. Cuendet +2

    Мақола20104 иқтибос
    ABI

  25. CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields

    Kenno Vanommeslaeghe, Elizabeth Hatcher, Chitrangada Acharya +8

    Мақола20094 иқтибос
    ABI