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AkademBaseЭкотизим учун очиқ API
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Ушбу иш иқтибос қилган ишлар

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Иш: Chromosome-level genome assembly of Albizia odoratissima and effect of flavonoid metabolic pathways under drought stress

  1. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Мақола201114 иқтибос
    ABI

  2. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Мақола200711 иқтибос
    ABI

  3. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    Мақола20157 иқтибос
    ABI

  4. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    Мақола19977 иқтибос
    ABI

  5. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Мақола20217 иқтибос
    ABI

  6. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Мақола20157 иқтибос
    ABI

  7. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    Мақола20086 иқтибос
    ABI

  8. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Мақола20036 иқтибос
    ABI

  9. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

    Huaiyu Mi, Anushya Muruganujan, Dustin Ebert +2

    Мақола20185 иқтибос
    ABI

  10. Proline: a multifunctional amino acid

    László Szabados, Arnould Savouré

    Шарҳ мақола20094 иқтибос
    ABI

  11. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    Мақола20174 иқтибос
    ABI

  12. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4

    Мақола20174 иқтибос
    ABI

  13. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

    Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6

    Мақола20224 иқтибос
    ABI

  14. Gene finding in novel genomes

    Ian Korf

    Мақола20043 иқтибос
    ABI

  15. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

    Zhigang Xu, Hao Wang

    Мақола20073 иқтибос
    ABI

  16. The Pfam protein families database in 2019

    Sara El-Gebali, Jaina Mistry, Alex Bateman +13

    Мақола20183 иқтибос
    ABI

  17. Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding

    Mario Stanke, Mark Diekhans, Robert Baertsch +1

    Мақола20083 иқтибос
    ABI

  18. Infernal 1.1: 100-fold faster RNA homology searches

    Eric P. Nawrocki, Sean R. Eddy

    Мақола20133 иқтибос
    ABI

  19. HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

    Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6

    Мақола20153 иқтибос
    ABI

  20. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

    Joshua N. Burton, Andrew Adey, Rupali P Patwardhan +3

    Мақола20132 иқтибос
    ABI

  21. KEGG as a reference resource for gene and protein annotation

    Minoru Kanehisa, Yoko Sato, Masayuki Kawashima +2

    Мақола20152 иқтибос
    ABI

  22. Flavonoid-attracted <i>Aeromonas</i> sp. from the Arabidopsis root microbiome enhances plant dehydration resistance

    Danxia He, Sunil Kumar Singh, Peng Li +8

    Мақола20222 иқтибос
    ABI

  23. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

    David Emms, Steven Kelly

    Мақола20152 иқтибос
    ABI

  24. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

    Brigitte Boeckmann

    Мақола20032 иқтибос
    ABI

  25. miRBase: microRNA sequences, targets and gene nomenclature

    Sam Griffiths‐Jones

    Мақола20052 иқтибос
    ABI