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Ушбу иш иқтибос қилган ишлар

47 та иш

Иш: Haplotype-resolved chromosome-level genome assembly of an autohexaploid oil camellia tree Camellia osmantha

  1. fastp: an ultra-fast all-in-one FASTQ preprocessor

    Shifu Chen, Yanqing Zhou, Yaru Chen +1

    Мақола201818 иқтибос
    ABI

  2. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Мақола201114 иқтибос
    ABI

  3. Fast and sensitive protein alignment using DIAMOND

    Benjamin Buchfink, Chao Xie, Daniel H. Huson

    Мақола201412 иқтибос
    ABI

  4. Fast gapped-read alignment with Bowtie 2

    Ben Langmead, Steven L. Salzberg

    Мақола201211 иқтибос
    ABI

  5. KEGG: Kyoto Encyclopedia of Genes and Genomes

    Minoru Kanehisa

    Мақола200010 иқтибос
    ABI

  6. Tandem repeats finder: a program to analyze DNA sequences

    Gary Benson

    Мақола199910 иқтибос
    ABI

  7. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    Мақола19977 иқтибос
    ABI

  8. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Мақола20217 иқтибос
    ABI

  9. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Мақола20157 иқтибос
    ABI

  10. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Мақола20116 иқтибос
    ABI

  11. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Мақола20036 иқтибос
    ABI

  12. InterProScan 5: genome-scale protein function classification

    Philip Jones, David Binns, Hsin-Yu Chang +14

    Мақола20145 иқтибос
    ABI

  13. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

    T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz

    Мақола20204 иқтибос
    ABI

  14. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Мақола20174 иқтибос
    ABI

  15. KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences

    Zhang Zhang

    Мақола20224 иқтибос
    ABI

  16. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

    Zhigang Xu, Hao Wang

    Мақола20073 иқтибос
    ABI

  17. Infernal 1.1: 100-fold faster RNA homology searches

    Eric P. Nawrocki, Sean R. Eddy

    Мақола20133 иқтибос
    ABI

  18. HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

    Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6

    Мақола20153 иқтибос
    ABI

  19. RepeatModeler2 for automated genomic discovery of transposable element families

    Jullien M. Flynn, Robert Hubley, Clément Goubert +4

    Мақола20203 иқтибос
    ABI

  20. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Neva C. Durand, Muhammad S. Shamim, Ido Machol +4

    Мақола20163 иқтибос
    ABI

  21. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

    Nathalie Choisne, Béatrice Segurens, Patrick Wincker +61

    Мақола20073 иқтибос
    ABI

  22. Camellia as an Oilseed Crop

    Haiying Liang, Bing-Qing Hao, Guo-Chen Chen +2

    Мақола20173 иқтибос
    ABI

  23. The complex hexaploid oil‐Camellia genome traces back its phylogenomic history and multi‐omics analysis of Camellia oil biosynthesis

    Huaguo Zhu, Fuqiu Wang, Zhongping Xu +20

    Мақола20243 иқтибос
    ABI

  24. The tetraploid Camellia oleifera genome provides insights into evolution, agronomic traits, and genetic architecture of oil Camellia plants

    Lin Zhang, Shi Yan, Wenfang Gong +15

    Мақола20243 иқтибос
    ABI

  25. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences

    Maja Tarailo‐Graovac, Nansheng Chen

    Мақола20093 иқтибос
    ABI