MISA-web: a web server for microsatellite prediction
Sebastian BeierLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, Seeland, GermanyThomas ThielKWS Saat SE, Grimsehlstr. 31, Einbeck, GermanyThomas A. MünchLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, Seeland, GermanyUwe ScholzLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, Seeland, GermanyMartin MascherGerman Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Germany
2017en
ABI
Аннотация
MOTIVATION: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. RESULTS: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. AVAILABILITY AND IMPLEMENTATION: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code. CONTACT: [email protected].
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