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Иш: Integrative multi-omics analysis traces the divergent evolution of Chinese and Vietnamese Cinnamon and elucidates the biosynthetic pathway of cinnamaldehyde derivatives

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Мақола201370 иқтибос
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Мақола201469 иқтибос
    ABI

  3. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Мақола200926 иқтибос
    ABI

  4. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Мақола201925 иқтибос
    ABI

  5. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Мақола201423 иқтибос
    ABI

  6. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Мақола202023 иқтибос
    ABI

  7. Fast model-based estimation of ancestry in unrelated individuals

    David H. Alexander, John Novembre, Kenneth Lange

    Мақола200919 иқтибос
    ABI

  8. The variant call format and VCFtools

    Petr Danecek, Adam Auton, Gonçalo R. Abecasis +10

    Мақола201119 иқтибос
    ABI

  9. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Мақола200711 иқтибос
    ABI

  10. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

    Aaron McKenna, Matthew G. Hanna, Eric Banks +8

    Мақола20109 иқтибос
    ABI

  11. Second-generation PLINK: rising to the challenge of larger and richer datasets

    Christopher Chang, Carson C. Chow, Laurent CAM Tellier +3

    Мақола20159 иқтибос
    ABI

  12. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    Мақола20157 иқтибос
    ABI

  13. The domestication and evolutionary ecology of apples

    Amandine Cornille, Tatiana Giraud, M.J.M. Smulders +2

    Шарҳ мақола20137 иқтибос
    ABI

  14. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Мақола20217 иқтибос
    ABI

  15. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Мақола20157 иқтибос
    ABI

  16. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Мақола20116 иқтибос
    ABI

  17. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Мақола20036 иқтибос
    ABI

  18. OrthoFinder: phylogenetic orthology inference for comparative genomics

    David Emms, Steven Kelly

    Мақола20195 иқтибос
    ABI

  19. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    Мақола20174 иқтибос
    ABI

  20. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

    T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz

    Мақола20204 иқтибос
    ABI

  21. Genomic variation in 3,010 diverse accessions of Asian cultivated rice

    Wensheng Wang, Ramil Mauleon, Zhiqiang Hu +68

    Мақола20184 иқтибос
    ABI

  22. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Мақола20174 иқтибос
    ABI

  23. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Neva C. Durand, Muhammad S. Shamim, Ido Machol +4

    Мақола20163 иқтибос
    ABI

  24. PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

    Chi Zhang, Shan‐Shan Dong, Junyang Xu +2

    Мақола20182 иқтибос
    ABI

  25. Crop genetic erosion: understanding and responding to loss of crop diversity

    Colin K. Khoury, Stephen B. Brush, Denise E. Costich +12

    Шарҳ мақола20212 иқтибос
    ABI