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71 ta ish

Ish: Ancient human genomes suggest three ancestral populations for present-day Europeans

  1. Fast and accurate short read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    MaqolaOchiq kirish200929 iqtibos
    ABI

  2. The Sequence Alignment/Map format and SAMtools

    Heng Li, Bob Handsaker, Alec Wysoker +7

    MaqolaOchiq kirish200925 iqtibos
    ABI

  3. Fast model-based estimation of ancestry in unrelated individuals

    David H. Alexander, John Novembre, Kenneth Lange

    MaqolaOchiq kirish200923 iqtibos
    ABI

  4. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

    Matthias Meyer, Martin Kircher

    Maqola201022 iqtibos
    ABI

  5. The variant call format and VCFtools

    Petr Danecek, Adam Auton, Gonçalo R. Abecasis +10

    MaqolaOchiq kirish201121 iqtibos
    ABI

  6. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

    Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown +8

    MaqolaOchiq kirish200720 iqtibos
    ABI

  7. Ancient Admixture in Human History

    Nick Patterson, Priya Moorjani, Yontao Luo +6

    MaqolaOchiq kirish201216 iqtibos
    ABI

  8. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

    Koichiro Tamura, Daniel G. Peterson, Nora Peterson +3

    MaqolaOchiq kirish201114 iqtibos
    ABI

  9. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

    Maanasa Raghavan, Pontus Skoglund, Kelly E. Graf +28

    MaqolaOchiq kirish201312 iqtibos
    ABI

  10. BEAST: Bayesian evolutionary analysis by sampling trees

    Alexei J. Drummond, Andrew Rambaut

    MaqolaOchiq kirish200711 iqtibos
    ABI

  11. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

    Aaron McKenna, Matthew G. Hanna, Eric Banks +8

    MaqolaOchiq kirish201011 iqtibos
    ABI

  12. A Genetic Atlas of Human Admixture History

    Garrett Hellenthal, George Busby, Gavin Band +4

    MaqolaOchiq kirish201410 iqtibos
    ABI

  13. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

    Jesse Dabney, Michael Knapp, Isabelle Glocke +8

    MaqolaOchiq kirish201310 iqtibos
    ABI

  14. Population Structure and Eigenanalysis

    Nick Patterson, Alkes L. Price, David Reich

    MaqolaOchiq kirish20069 iqtibos
    ABI

  15. Inference of Population Structure using Dense Haplotype Data

    Daniel J. Lawson, Garrett Hellenthal, Simon Myers +1

    MaqolaOchiq kirish20128 iqtibos
    ABI

  16. Inference of human population history from individual whole-genome sequences

    Heng Li, Richard Durbin

    MaqolaOchiq kirish20118 iqtibos
    ABI

  17. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

    Mattias Jakobsson, Noah A. Rosenberg

    MaqolaOchiq kirish20078 iqtibos
    ABI

  18. Genetic history of an archaic hominin group from Denisova Cave in Siberia

    David Reich, Richard E. Green, Martin Kircher +25

    MaqolaOchiq kirish20107 iqtibos
    ABI

  19. Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

    Joseph K. Pickrell, Jonathan K. Pritchard

    MaqolaOchiq kirish20127 iqtibos
    ABI

  20. An integrated map of genetic variation from 1,092 human genomes

    Zamin Iqbal, Zamin Iqbal, Andy Rimmer +95

    Maqola20127 iqtibos
    ABI

  21. Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

    Po‐Ru Loh, Mark Lipson, Nick Patterson +4

    MaqolaOchiq kirish20137 iqtibos
    ABI

  22. A High-Coverage Genome Sequence from an Archaic Denisovan Individual

    Matthias Meyer, Martin Kircher, Marie-Theres Gansauge +31

    MaqolaOchiq kirish20126 iqtibos
    ABI

  23. The complete genome sequence of a Neanderthal from the Altai Mountains

    Kay Prüfer, Fernando Racimo, Nick Patterson +42

    MaqolaOchiq kirish20136 iqtibos
    ABI

  24. Reconstructing Indian population history

    David Reich, Kumarasamy Thangaraj, Nick Patterson +2

    MaqolaOchiq kirish20096 iqtibos
    ABI

  25. Principal components analysis corrects for stratification in genome-wide association studies

    Alkes L. Price, Nick J. Patterson, Robert M. Plenge +3

    Maqola20066 iqtibos
    ABI