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Ish: Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (<i>Bubalus bubalis</i>)

  1. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

    Sudhir Kumar, Glen Stecher, Koichiro Tamura

    MaqolaOchiq kirish201651 iqtibos
    ABI

  2. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

    Kazutaka Katoh, John Rozewicki, Kazunori Yamada

    MaqolaOchiq kirish201731 iqtibos
    ABI

  3. The Sequence Alignment/Map format and SAMtools

    Heng Li, Bob Handsaker, Alec Wysoker +7

    MaqolaOchiq kirish200925 iqtibos
    ABI

  4. The variant call format and VCFtools

    Petr Danecek, Adam Auton, Gonçalo R. Abecasis +10

    MaqolaOchiq kirish201121 iqtibos
    ABI

  5. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

    Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown +8

    MaqolaOchiq kirish200720 iqtibos
    ABI

  6. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    MaqolaOchiq kirish201414 iqtibos
    ABI

  7. Median-joining networks for inferring intraspecific phylogenies

    H. -J. Bandelt, Patrick Forster, Andrew L. Rohl

    MaqolaOchiq kirish199913 iqtibos
    ABI

  8. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

    Daehwan Kim, Joseph M. Paggi, Chanhee Park +2

    MaqolaOchiq kirish20199 iqtibos
    ABI

  9. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    MaqolaOchiq kirish20158 iqtibos
    ABI

  10. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    MaqolaOchiq kirish20127 iqtibos
    ABI

  11. Minimap2: pairwise alignment for nucleotide sequences

    Heng Li

    MaqolaOchiq kirish20186 iqtibos
    ABI

  12. Sarlavhasiz

    BoshqaOchiq kirish3 iqtibos
    ABI

  13. Detecting recent positive selection in the human genome from haplotype structure

    Pardis C. Sabeti, David Reich, John M. Higgins +14

    Maqola20023 iqtibos
    ABI

  14. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

    Morgan N. Price, Paramvir Dehal, Adam P. Arkin

    MaqolaOchiq kirish20093 iqtibos
    ABI

  15. The biology of color

    Innes C. Cuthill, William L. Allen, Kevin Arbuckle +24

    Sharh maqolaOchiq kirish20173 iqtibos
    ABI

  16. Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

    Wai Yee Low, Rick Tearle, Derek M. Bickhart +12

    MaqolaOchiq kirish20192 iqtibos
    ABI

  17. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

    Cole Trapnell, Adam Roberts, Loyal A. Goff +7

    MaqolaOchiq kirish20122 iqtibos
    ABI

  18. Sarlavhasiz

    BoshqaOchiq kirish2 iqtibos
    ABI

  19. Genetics, development and evolution of adaptive pigmentation in vertebrates

    Hopi E. Hoekstra

    Sharh maqolaOchiq kirish20062 iqtibos
    ABI

  20. Sarlavhasiz

    BoshqaOchiq kirish2 iqtibos
    ABI

  21. Canu: scalable and accurate long-read assembly via adaptive <i>k</i> -mer weighting and repeat separation

    Sergey Koren, Brian P. Walenz, Konstantin Berlin +3

    MaqolaOchiq kirish20172 iqtibos
    ABI

  22. Selection signatures in goats reveal copy number variants underlying breed-defining coat color phenotypes

    Jan Henkel, Rashid Saif, Vidhya Jagannathan +10

    MaqolaOchiq kirish20192 iqtibos
    ABI

  23. Sarlavhasiz

    BoshqaOchiq kirish1 iqtibos
    ABI

  24. Sarlavhasiz

    BoshqaOchiq kirish1 iqtibos
    ABI

  25. Sarlavhasiz

    Boshqa1 iqtibos
    ABI