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Ish: Fungal diversity notes 1512–1610: taxonomic and phylogenetic contributions on genera and species of fungal taxa

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    MaqolaOchiq kirish201491 iqtibos
    ABI

  3. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    MaqolaOchiq kirish201283 iqtibos
    ABI

  4. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

    Sudhir Kumar, Glen Stecher, Michael Li +2

    MaqolaOchiq kirish201861 iqtibos
    ABI

  5. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

    Koichiro Tamura, Glen Stecher, Daniel S. Peterson +2

    MaqolaOchiq kirish201335 iqtibos
    ABI

  6. MrBayes 3: Bayesian phylogenetic inference under mixed models

    Fredrik Ronquist, John P. Huelsenbeck

    MaqolaOchiq kirish200326 iqtibos
    ABI

  7. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

    Alexandros Stamatakis

    MaqolaOchiq kirish200625 iqtibos
    ABI

  8. MUSCLE: multiple sequence alignment with high accuracy and high throughput

    R. C. Edgar

    MaqolaOchiq kirish200421 iqtibos
    ABI

  9. Families of Dothideomycetes

    Kevin D. Hyde, E. B. Gareth Jones, Jian‐Kui Liu +65

    MaqolaOchiq kirish201319 iqtibos
    ABI

  10. Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae

    Dhanushka N. Wanasinghe, Chayanard Phukhamsakda, Kevin D. Hyde +26

    MaqolaPlant Pathogens and Fungal DiseasesFungal Diversity201819 iqtibos
    ABI

  11. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

    Julie Thompson, Desmond G. Higgins, Toby J. Gibson

    MaqolaOchiq kirish199417 iqtibos
    ABI

  12. Creating the CIPRES Science Gateway for inference of large phylogenetic trees

    Mark A. Miller, Wayne Pfeiffer, Terri Schwartz

    Maqola201016 iqtibos
    ABI

  13. Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities

    Rajesh Jeewon

    MaqolaOchiq kirish201615 iqtibos
    ABI

  14. Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa

    Kevin D. Hyde, Sinang Hongsanan, Rajesh Jeewon +97

    Maqola201615 iqtibos
    ABI

  15. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi

    Rungtiwa Phookamsak, Kevin D. Hyde, Rajesh Jeewon +97

    MaqolaOchiq kirish201914 iqtibos
    ABI

  16. Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa

    Hiran A. Ariyawansa, Kevin D. Hyde, Subashini C. Jayasiri +96

    Maqola201514 iqtibos
    ABI

  17. Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa

    Saowaluck Tibpromma, Kevin D. Hyde, Rajesh Jeewon +97

    Maqola201714 iqtibos
    ABI

  18. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

    Stéphane Guindon, Jean-François Dufayard, Vincent Lefort +3

    MaqolaOchiq kirish201013 iqtibos
    ABI

  19. Notes for genera: Ascomycota

    Nalin N. Wijayawardene, Kevin D. Hyde, Kunhiraman C. Rajeshkumar +94

    MaqolaOchiq kirish201713 iqtibos
    ABI

  20. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation

    Duong Vu, Marizeth Groenewald, Michèl de Vries +11

    MaqolaOchiq kirish201813 iqtibos
    ABI

  21. The Top 10 fungal pathogens in molecular plant pathology

    Ralph A. Dean, J.A.L. van Kan, Z. A. Pretorius +8

    Sharh maqolaOchiq kirish201213 iqtibos
    ABI

  22. ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts

    Monique Gardes, Thomas D. Bruns

    Maqola199313 iqtibos
    ABI

  23. Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa

    Kevin D. Hyde, Danushka S. Tennakoon, Rajesh Jeewon +97

    MaqolaOchiq kirishPlant Pathogens and Fungal DiseasesFungal Diversity201912 iqtibos
    ABI

  24. Families of Sordariomycetes

    Sajeewa S. N. Maharachchikumbura, Kevin D. Hyde, E. B. Gareth Jones +38

    Maqola201612 iqtibos
    ABI

  25. Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species

    Jian‐Kui Liu, Kevin D. Hyde, E. B. Gareth Jones +75

    Maqola201512 iqtibos
    ABI