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Ish: Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.

  1. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    MaqolaOchiq kirish201491 iqtibos
    ABI

  2. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    MaqolaOchiq kirish201283 iqtibos
    ABI

  3. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    MaqolaOchiq kirish201276 iqtibos
    ABI

  4. jModelTest 2: more models, new heuristics and parallel computing

    Diego Darriba, Guillermo L. Taboada, Ramón Doallo +1

    BoshqaOchiq kirish201253 iqtibos
    ABI

  5. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    MaqolaOchiq kirish202048 iqtibos
    ABI

  6. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

    Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio +4

    MaqolaOchiq kirish201746 iqtibos
    ABI

  7. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

    Kazutaka Katoh, John Rozewicki, Kazunori Yamada

    MaqolaOchiq kirish201731 iqtibos
    ABI

  8. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    MaqolaOchiq kirish200931 iqtibos
    ABI

  9. REPuter: the manifold applications of repeat analysis on a genomic scale

    Stefan Kurtz

    MaqolaOchiq kirish200130 iqtibos
    ABI

  10. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

    MaqolaOchiq kirish202127 iqtibos
    ABI

  11. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    MaqolaOchiq kirish201527 iqtibos
    ABI

  12. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    MaqolaOchiq kirish201927 iqtibos
    ABI

  13. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    MaqolaOchiq kirish201223 iqtibos
    ABI

  14. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

    Susann Wicke, Gerald M. Schneeweiss, Claude W. dePamphilis +2

    MaqolaOchiq kirish201123 iqtibos
    ABI

  15. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

    Matthias Meyer, Martin Kircher

    Maqola201022 iqtibos
    ABI

  16. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

    Marc Lohse, Oliver Drechsel, Sabine Kahlau +1

    MaqolaOchiq kirish201319 iqtibos
    ABI

  17. Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation

    Renata Kurzyna‐Młynik, Alexei A. Oskolski, Stephen R. Downie +3

    Maqola200819 iqtibos
    ABI

  18. Ferula asafoetida : Traditional uses and pharmacological activity

    Poonam Mahendra, Shradha Bisht

    MaqolaOchiq kirish201218 iqtibos
    ABI

  19. Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +6

    MaqolaOchiq kirish201818 iqtibos
    ABI

  20. The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity

    Rafaël Govaerts, Eimear Nic Lughadha, Nicholas Black +2

    MaqolaOchiq kirish202118 iqtibos
    ABI

  21. Phylogenetic relationships among <i>Dorema</i> , <i>Ferula</i> and <i>Leutea</i> (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +3

    Maqola201517 iqtibos
    ABI

  22. Carpology of the species of <i>Ferula</i> subgen. <i>Merwia</i> (Umbelliferae–Apioideae) and some taxonomic implications

    Л.К. Сафина, Т. А. Остроумова, M. G. Pimenov

    Maqola201416 iqtibos
    ABI

  23. Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

    Aaron E. Darling, Bob Mau, Frederick R. Blattner +1

    Maqola200416 iqtibos
    ABI

  24. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

    Chang Liu, Linchun Shi, Yingjie Zhu +4

    MaqolaOchiq kirish201216 iqtibos
    ABI

  25. Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

    Andan Zhu, Wenhu Guo, Sakshi Gupta +2

    MaqolaOchiq kirish201516 iqtibos
    ABI