Asosiy kontentga oʻtish
AkademIndex

Xizmatlar

← Ishga qaytish

Ushbu ish iqtibos qilgan ishlar

46 ta ish

Ish: On the Automatic Optimization of Lipid Models in the Martini Force Field using SwarmCG

  1. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

    M Abraham, Teemu J. Murtola, Roland Schulz +4

    MaqolaOchiq kirish201541 iqtibos
    ABI

  2. Polymorphic transitions in single crystals: A new molecular dynamics method

    Michele Parrinello, A. Rahman

    Maqola198131 iqtibos
    ABI

  3. Canonical sampling through velocity rescaling

    Giovanni Bussi, Davide Donadio, Michele Parrinello

    MaqolaOchiq kirish200727 iqtibos
    ABI

  4. GROMACS: A message-passing parallel molecular dynamics implementation

    Herman J. C. Berendsen, David van der Spoel, Rudi van Drunen

    Maqola19958 iqtibos
    ABI

  5. CHARMM‐GUI: A web‐based graphical user interface for CHARMM

    Sunhwan Jo, Taehoon Kim, Vidyashankara Iyer +1

    Maqola20087 iqtibos
    ABI

  6. The MARTINI Force Field:  Coarse Grained Model for Biomolecular Simulations

    ‪Siewert J. Marrink, Herre Jelger Risselada, S. Yefimov +2

    Maqola20074 iqtibos
    ABI

  7. Two decades of Martini: Better beads, broader scope

    ‪Siewert J. Marrink, Luca Monticelli, Manuel N. Melo +3

    Maqola20223 iqtibos
    ABI

  8. Coarse Grained Model for Semiquantitative Lipid Simulations

    ‪Siewert J. Marrink, Alex H. de Vries, Alan E. Mark

    Maqola20033 iqtibos
    ABI

  9. Capturing Phase Behavior of Ternary Lipid Mixtures with a Refined Martini Coarse-Grained Force Field

    Timothy S. Carpenter, César A. López, Chris Neale +5

    Maqola20183 iqtibos
    ABI

  10. Martini 3: a general purpose force field for coarse-grained molecular dynamics

    Paulo C. T. Souza, Riccardo Alessandri, Jonathan Barnoud +23

    Maqola20213 iqtibos
    ABI

  11. Bottom-up Coarse-Graining: Principles and Perspectives

    Jaehyeok Jin, Alexander J. Pak, Aleksander E. P. Durumeric +2

    Sharh maqola20223 iqtibos
    ABI

  12. Optimal Transport: Old and New

    Cédric Villani

    Kitob20132 iqtibos
    ABI

  13. A Linear Time Histogram Metric for Improved SIFT Matching

    Ofir Pele, Michael Werman

    Bob20082 iqtibos
    ABI

  14. Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature

    Norbert Kučerka, Mu‐Ping Nieh, John Katsaras

    Maqola20112 iqtibos
    ABI

  15. Orientation of Tie-Lines in the Phase Diagram of DOPC/DPPC/Cholesterol Model Biomembranes

    Pradeep Uppamoochikkal, Stephanie Tristram‐Nagle, John F. Nagle

    Maqola20102 iqtibos
    ABI

  16. Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles

    ‪Siewert J. Marrink, Alan E. Mark

    Maqola20032 iqtibos
    ABI

  17. Structure of Gel Phase DMPC Determined by X-Ray Diffraction

    Stephanie Tristram‐Nagle, Yufeng Liu, Justin Legleiter +1

    Maqola20022 iqtibos
    ABI

  18. Fast and robust Earth Mover's Distances

    Ofir Pele, Michael Werman

    Maqola20092 iqtibos
    ABI

  19. Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex

    Floris J. van Eerden, Manuel N. Melo, Pim W. J. M. Frederix +2

    Maqola20172 iqtibos
    ABI

  20. Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization

    Marco S. Nobile, Paolo Cazzaniga, Daniela Besozzi +3

    Maqola20172 iqtibos
    ABI

  21. Structural basis for maintenance of bacterial outer membrane lipid asymmetry

    Javier Abellón‐Ruiz, Shreyas Kaptan, Arnaud Baslé +4

    Maqola20172 iqtibos
    ABI

  22. A tethering complex drives the terminal stage of SNARE-dependent membrane fusion

    M. D’Agostino, Herre Jelger Risselada, Anna Lürick +2

    Maqola20172 iqtibos
    ABI

  23. Hydrodynamics of Diffusion in Lipid Membrane Simulations

    Martin Vögele, Jürgen Köfinger, Gerhard Hummer

    Maqola20182 iqtibos
    ABI

  24. Particle Swarm Optimization: A Survey of Historical and Recent Developments with Hybridization Perspectives

    Saptarshi Sengupta, Sanchita Basak, Richard Alan Peters

    Maqola20182 iqtibos
    ABI

  25. Structure of gel phase DPPC determined by X-ray diffraction

    John F. Nagle, Pierre Cognet, Fernando G. Dupuy +1

    Maqola20182 iqtibos
    ABI