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Ish: MSA clustering enhances AF-Multimer’s ability to predict conformational landscapes of protein–protein interactions
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
M Abraham, Teemu J. Murtola, Roland Schulz +4
MaqolaOchiq kirish201541 iqtibosABIHighly accurate protein structure prediction with AlphaFold
John Jumper, Richard Evans, Alexander Pritzel +31
Maqola202112 iqtibosABICHARMM36m: an improved force field for folded and intrinsically disordered proteins
Jing Huang, Sarah Rauscher, Grzegorz Nawrocki +5
MaqolaOchiq kirish20169 iqtibosABIAccurate structure prediction of biomolecular interactions with AlphaFold 3
Josh Abramson, Jonas Adler, Jack Dunger +45
MaqolaOchiq kirish20248 iqtibosABICHARMM-GUI<i>Membrane Builder</i>toward realistic biological membrane simulations
Emilia L. Wu, Xi Cheng, Sunhwan Jo +9
MaqolaOchiq kirish20143 iqtibosABIColabFold: making protein folding accessible to all
Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki +3
Maqola20223 iqtibosABIProtein complex prediction with AlphaFold-Multimer
Richard Evans, M. E. O’Neill, Alexander Pritzel +19
Preprint20212 iqtibosABI