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46 ta ish

Ish: Integrating phylogenomic and morphological evidence to solve the taxonomy of Phoebe legendrei (Lauraceae) and closely related species

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    MaqolaOchiq kirish201283 iqtibos
    ABI

  3. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    MaqolaOchiq kirish201276 iqtibos
    ABI

  4. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

    Sudhir Kumar, Glen Stecher, Koichiro Tamura

    MaqolaOchiq kirish201651 iqtibos
    ABI

  5. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    MaqolaOchiq kirish202048 iqtibos
    ABI

  6. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

    Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio +4

    MaqolaOchiq kirish201746 iqtibos
    ABI

  7. MEGA11: Molecular Evolutionary Genetics Analysis Version 11

    Koichiro Tamura, Glen Stecher, Sudhir Kumar

    MaqolaOchiq kirish202134 iqtibos
    ABI

  8. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

    Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler +1

    MaqolaOchiq kirish201431 iqtibos
    ABI

  9. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    MaqolaOchiq kirish200931 iqtibos
    ABI

  10. REPuter: the manifold applications of repeat analysis on a genomic scale

    Stefan Kurtz

    MaqolaOchiq kirish200130 iqtibos
    ABI

  11. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    MaqolaOchiq kirish201527 iqtibos
    ABI

  12. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    MaqolaOchiq kirish201927 iqtibos
    ABI

  13. MISA-web: a web server for microsatellite prediction

    Sebastian Beier, Thomas Thiel, Thomas A. Münch +2

    MaqolaOchiq kirish201720 iqtibos
    ABI

  14. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

    Stephan Greiner, Pascal Lehwark, Ralph Bock

    MaqolaOchiq kirish201920 iqtibos
    ABI

  15. GeSeq – versatile and accurate annotation of organelle genomes

    Michael Tillich, Pascal Lehwark, Tommaso Pellizzer +4

    MaqolaOchiq kirish201713 iqtibos
    ABI

  16. ggplot2

    Hadley Wickham

    Kitob201611 iqtibos
    ABI

  17. Ultrafast Approximation for Phylogenetic Bootstrap

    Bùi Quang Minh, Minh Anh Nguyen, A. von Haeseler

    MaqolaOchiq kirish201310 iqtibos
    ABI

  18. CPGAVAS2, an integrated plastome sequence annotator and analyzer

    Linchun Shi, Haimei Chen, Mei Jiang +4

    MaqolaOchiq kirish20199 iqtibos
    ABI

  19. Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

    Ivica Letunić, Peer Bork

    Maqola20249 iqtibos
    ABI

  20. VISTA: computational tools for comparative genomics

    Kelly A. Frazer, Lior Pachter, Alexandre Poliakov +2

    Maqola20048 iqtibos
    ABI

  21. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)

    Thomas Thiel, W. Michalek, Rajeev K. Varshney +1

    Maqola20035 iqtibos
    ABI

  22. KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences

    Zhang Zhang

    Maqola20224 iqtibos
    ABI

  23. The Ka/Ks ratio: diagnosing the form of sequence evolution

    Laurence D. Hurst

    Sharh maqola20023 iqtibos
    ABI

  24. A Modified CTAB Protocol for Plant DNA Extraction

    Jinlu Li, Shuo Wang, Jing Yu +2

    Maqola20133 iqtibos
    ABI

  25. Can plastid genome sequencing be used for species identification in Lauraceae?

    Zhi‐Fang Liu, Hui Ma, Xiuqin Ci +13

    Maqola20213 iqtibos
    ABI