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Ish: Molecular and morphological evidence support merging <i>Autumnalia</i> , <i>Fergania</i> , and <i>Kafirnigania</i> into <i>Ferula</i> (Apiaceae)

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    MaqolaOchiq kirish201491 iqtibos
    ABI

  3. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    MaqolaOchiq kirish201283 iqtibos
    ABI

  4. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    MaqolaOchiq kirish201276 iqtibos
    ABI

  5. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    MaqolaOchiq kirish202048 iqtibos
    ABI

  6. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    MaqolaOchiq kirish201735 iqtibos
    ABI

  7. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    MaqolaOchiq kirish200931 iqtibos
    ABI

  8. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

    MaqolaOchiq kirish202127 iqtibos
    ABI

  9. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    MaqolaOchiq kirish201527 iqtibos
    ABI

  10. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    MaqolaOchiq kirish201927 iqtibos
    ABI

  11. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    MaqolaOchiq kirish201223 iqtibos
    ABI

  12. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

    Marc Lohse, Oliver Drechsel, Sabine Kahlau +1

    MaqolaOchiq kirish201319 iqtibos
    ABI

  13. Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation

    Renata Kurzyna‐Młynik, Alexei A. Oskolski, Stephen R. Downie +3

    Maqola200819 iqtibos
    ABI

  14. Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +6

    MaqolaOchiq kirish201818 iqtibos
    ABI

  15. Phylogenetic relationships among <i>Dorema</i> , <i>Ferula</i> and <i>Leutea</i> (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +3

    Maqola201517 iqtibos
    ABI

  16. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

    Chang Liu, Linchun Shi, Yingjie Zhu +4

    MaqolaOchiq kirish201216 iqtibos
    ABI

  17. Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data

    Jun Wen, Deng‐Feng Xie, Megan Price +5

    Maqola202114 iqtibos
    ABI

  18. An updated tribal classification of Lamiaceae based on plastome phylogenomics

    Fei Zhao, Yaping Chen, Yasaman Salmaki +12

    MaqolaOchiq kirish202110 iqtibos
    ABI

  19. phytools: an R package for phylogenetic comparative biology (and other things)

    Liam J. Revell

    Maqola201110 iqtibos
    ABI

  20. Resolving the phylogenetic position of <i>Ombrocharis</i> (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae

    Yaping Chen, Bryan T. Drew, Bo Li +2

    Maqola20167 iqtibos
    ABI

  21. <i>Salvia</i> united: The greatest good for the greatest number

    Bryan T. Drew, Jesús Guadalupe González‐Gallegos, Chun‐Lei Xiang +4

    Maqola20177 iqtibos
    ABI

  22. Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.

    Lei Yang, Ozodbek Abduraimov, Komiljon Tojibaev +3

    MaqolaOchiq kirishPlant chemical constituents analysisBMC Genomics20226 iqtibos
    ABI

  23. Major clades within Apiaceae subfamily Apioideae as inferred by phylogenetic analysis of nrDNA ITS sequences

    Stephen R. Downie, Krzysztof Spalik, Deborah S. Katz‐Downie +1

    Maqola20105 iqtibos
    ABI

  24. Contrasting nuclear‐plastidial phylogenetic patterns in the recently diverged Iberian <i>Phlomis crinita</i> and <i>P. lychnitis</i> lineages (Lamiaceae)

    Rafael G. Albaladejo, Javier Aguilar, Abelardo Aparicio +1

    MaqolaOchiq kirish20055 iqtibos
    ABI

  25. Ribosomal ITS sequences and plant phylogenetic inference

    Inés Álvarez, Jonathan F. Wendel

    Sharh maqola20034 iqtibos
    ABI