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97 ta ish

Ish: Structured phylogenomic conflict and reticulate evolution shape diversification in Hedysarum

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    MaqolaOchiq kirish201491 iqtibos
    ABI

  3. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    MaqolaOchiq kirish201276 iqtibos
    ABI

  4. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    MaqolaOchiq kirish202048 iqtibos
    ABI

  5. Matplotlib: A 2D Graphics Environment

    John D. Hunter

    Maqola200739 iqtibos
    ABI

  6. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    MaqolaOchiq kirish201735 iqtibos
    ABI

  7. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    MaqolaOchiq kirish200931 iqtibos
    ABI

  8. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    MaqolaOchiq kirish202029 iqtibos
    ABI

  9. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

    Yoav Benjamini, Yosef Hochberg

    Maqola199526 iqtibos
    ABI

  10. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

    Andrew Rambaut, Alexei J. Drummond, Dong Xie +2

    MaqolaOchiq kirish201824 iqtibos
    ABI

  11. UFBoot2: Improving the Ultrafast Bootstrap Approximation

    Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler +2

    MaqolaOchiq kirish201715 iqtibos
    ABI

  12. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

    Remco Bouckaert, Timothy G. Vaughan, Joëlle Barido‐Sottani +22

    MaqolaOchiq kirish201914 iqtibos
    ABI

  13. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

    Stéphane Guindon, Jean-François Dufayard, Vincent Lefort +3

    MaqolaOchiq kirish201013 iqtibos
    ABI

  14. BLAST+: architecture and applications

    Christiam Camacho, George Coulouris, Vahram Avagyan +4

    MaqolaOchiq kirish20099 iqtibos
    ABI

  15. RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

    Yan Yu, AJ Harris, Christopher Blair +1

    Maqola20158 iqtibos
    ABI

  16. Onset of Asian desertification by 22 Myr ago inferred from loess deposits in China

    Zhengtang Guo, William F Ruddiman, Qingzhen Hao +7

    Maqola20027 iqtibos
    ABI

  17. Gene Trees in Species Trees

    Wayne P. Maddison

    Maqola19975 iqtibos
    ABI

  18. Molecular phylogeny and divergence times of the genus Hedysarum (Fabaceae) with special reference to section Multicaulia in Southwest Asia

    Haniyeh Nafisi, Shahrokh Kazempour Osaloo, Valiollah Mozaffarian +1

    Maqola20195 iqtibos
    ABI

  19. Visions of the past and dreams of the future in the <scp>O</scp>rient: the <scp>I</scp>rano‐<scp>T</scp>uranian region from classical botany to evolutionary studies

    Sara Manafzadeh, Yannick M. Staedler, Elena Conti

    Sharh maqolaOchiq kirish20165 iqtibos
    ABI

  20. The role of the uplift of the Qinghai‐Tibetan Plateau for the evolution of Tibetan biotas

    Adrien Favre, Martin Päckert, Steffen U. Pauls +4

    Sharh maqola20145 iqtibos
    ABI

  21. Late Miocene northward propagation of the northeast Pamir thrust system, northwest China

    J. A. Thompson, Douglas W. Burbank, Tao Li +2

    Maqola20155 iqtibos
    ABI

  22. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

    Chao Zhang, Maryam Rabiee, Erfan Sayyari +1

    Maqola20185 iqtibos
    ABI

  23. Testing for Ancient Admixture between Closely Related Populations

    Éric Durand, Nick Patterson, David Reich +1

    MaqolaOchiq kirish20114 iqtibos
    ABI

  24. Trends, Rhythms, and Aberrations in Global Climate 65 Ma to Present

    James C. Zachos, Mark Pagani, Lisa C. Sloan +2

    Sharh maqola20014 iqtibos
    ABI

  25. Orographic Controls on Climate and Paleoclimate of Asia: Thermal and Mechanical Roles for the Tibetan Plateau

    Péter Molnár, William R. Boos, David S. Battisti

    Maqola20104 iqtibos
    ABI