Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan BolyenCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAJai Ram RideoutCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAMatthew R. DillonCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USANicholas A. BokulichCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAChristian C. AbnetMetabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USAGabriel A. Al‐GhalithDepartment of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USAHarriet AlexanderDepartment of Population Health and Reproduction, University of California, Davis, Davis, CA, USAEric J. AlmCenter for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USAManimozhiyan ArumugamNovo Nordisk FoundationFrancesco AsnicarCentre for Integrative Biology, University of Trento, Trento, ItalyYang BaiUniversity of Chinese Academy of SciencesJordan E. BisanzDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USAKyle BittingerDivision of Gastroenterology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USAAsker BrejnrodNovo Nordisk FoundationColin BrislawnEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USAC. Titus BrownDepartment of Population Health and Reproduction, University of California, Davis, Davis, CA, USABenjamin J. CallahanBioinformatics Research Center, North Carolina State University, Raleigh, NC, USAAndrés Mauricio Caraballo‐RodríguezCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USAJohn ChaseCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAEmily K. CopeCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USARicardo SilvaUniversity of MontanaChristian DienerInstitute for Systems Biology, Seattle, WA, USAPieter C. DorresteinUniversity of MontanaGavin M. DouglasDepartment of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, CanadaDaniel M. DurallIrving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, CanadaClaire DuvalletDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USAChristian F. EdwardsonA. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USAMadeleine ErnstUniversity of MontanaMehrbod EstakiOkanagan University CollegeJennifer FouquierComputational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USAJulia M. GauglitzCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USASean M. GibbonseScience Institute, University of Washington, Seattle, WA, USADeanna L. GibsonOkanagan University CollegeAntonio GonzálezDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USAKestrel GorlickCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAJiarong GuoCenter for Microbial Ecology, Michigan State University, East Lansing, MI, USABenjamin HillmannDepartment of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USASusan HolmesStanford UniversityHannes HolsteDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USACurtis HuttenhowerBroad Institute of MIT and Harvard, Cambridge, MA, USAGavin HuttleyResearch School of Biology, The Australian National University, Canberra, Australian Capital Territory, AustraliaStefan JanssenDepartment of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, GermanyAlan K. JarmuschUniversity of MontanaLingjing JiangDepartment of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USABenjamin D. KaehlerACT GovernmentKyo Bin KangUniversity of MontanaChristopher R. KeefeCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAPaul KeimCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAScott T. KelleyDepartment of Biology, San Diego State University, San Diego, CA, USADan KnightsDepartment of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USAIrina KoesterCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USATomasz KościółekDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAJorden KrepsCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAMorgan G. I. LangilleDepartment of Pharmacology, Dalhousie University, Halifax, Nova Scotia, CanadaJoslynn S. LeeScience Education, Howard Hughes Medical Institute, Ashburn, VA, USARuth E. LeyDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USAYongxin LiuInstitute of Genetics and Developmental BiologyErikka LoftfieldMetabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USACatherine LozuponeDepartment of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USAMassoud MaherDepartment of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USAClarisse MarotzDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USABryan D MartinDepartment of Statistics, University of Washington, Seattle, WA, USADaniel McDonaldDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USALauren J. McIverBroad Institute of MIT and Harvard, Cambridge, MA, USAAlexey V. MelnikUniversity of MontanaJessica L. MetcalfDepartment of Animal Science, Colorado State University, Fort Collins, CO, USASydney MorganIrving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, CanadaJamie MortonDepartment of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USAAhmad Turan NaimeyCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USAJosé A. Navas-MolinaDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USALouis‐Félix NothiasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USAStephanie B. OrchanianCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, USATalima PearsonCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USASamuel L PeoplesSchool of STEM, University of Washington Bothell, Bothell, WA, USADaniel PetrasUniversity of MontanaMary L. PreussDepartment of Biological Sciences, Webster University, St. Louis, MO, USAElmar PruesseDepartment of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USALasse Buur RasmussenNovo Nordisk FoundationAdam R. RiversAgricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USAMichael S. RobesonCollege of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USAPatrick RosenthalDepartment of Biological Sciences, Webster University, St. Louis, MO, USANicola SegataCentre for Integrative Biology, University of Trento, Trento, ItalyMichael ShafferComputational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USAArron ShifferCenter for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USARashmi SinhaMetabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USASe Jin SongDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USAJohn R. SpearDepartment of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USAAustin D. SwaffordCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, USALuke ThompsonNorthern Gulf InstitutePedro J. TorresDepartment of Biology, San Diego State University, San Diego, CA, USAPauline TrinhDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USAAnupriya TripathiCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USAPeter J. TurnbaughDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USASabah Ul-HasanQuantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USAJustin J. J. van der HooftBioinformatics Group, Wageningen University, Wageningen, the NetherlandsFernando VargasDivision of Biological Sciences, University of California San Diego, San Diego, CA, USAYoshiki Vázquez‐BaezaDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USAEmily VogtmannMetabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USAMax von HippelDepartment of Mathematics, University of Arizona, Tucson, AZ, USAWilliam A. WaltersDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany
2019en
ABI
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