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Picante: R tools for integrating phylogenies and ecology

Steven W. KembelUniversity of OregonPeter D. CowanUniversity of California, BerkeleyMatthew R. Helmus1 Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR, 2 Department of Integrative Biology, University of California, Berkeley, CA, USA, 3 Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan, China, 4 Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada, 5 Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA, 6 Faculty of Biological and Chemical Sciences, University of Queensland, Brisbane, Australia and 7 Arnold Arboretum of Harvard University, Cambridge, MA, USAWilliam K. CornwellUniversity of California, BerkeleyHélène MorlonUniversity of California, BerkeleyDavid D. Ackerly1 Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR, 2 Department of Integrative Biology, University of California, Berkeley, CA, USA, 3 Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan, China, 4 Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada, 5 Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA, 6 Faculty of Biological and Chemical Sciences, University of Queensland, Brisbane, Australia and 7 Arnold Arboretum of Harvard University, Cambridge, MA, USASimon P. BlombergXishuangbanna Tropical Botanical GardenCampbell O. WebbUniversity of California, Berkeley

2010en

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Annotatsiya

SUMMARY: Picante is a software package that provides a comprehensive set of tools for analyzing the phylogenetic and trait diversity of ecological communities. The package calculates phylogenetic diversity metrics, performs trait comparative analyses, manipulates phenotypic and phylogenetic data, and performs tests for phylogenetic signal in trait distributions, community structure and species interactions. AVAILABILITY: Picante is a package for the R statistical language and environment written in R and C, released under a GPL v2 open-source license, and freely available on the web (http://picante.r-forge.r-project.org) and from CRAN (http://cran.r-project.org).

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DOI: 10.1093/bioinformatics/btq166

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