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36 ta ish

Ish: Molecular dynamics simulations of a DNA photolyase protein: High-mobility and conformational changes of the FAD molecule at low temperatures

  1. VMD: Visual molecular dynamics

    William Humphrey, Andrew Dalke, Klaus Schulten

    Maqola199677 iqtibos
    ABI

  2. Molecular dynamics with coupling to an external bath

    Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren +2

    Maqola198434 iqtibos
    ABI

  3. Comparison of simple potential functions for simulating liquid water

    William L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura +2

    Maqola198312 iqtibos
    ABI

  4. A smooth particle mesh Ewald method

    Ulrich Essmann, L. Perera, Max L. Berkowitz +3

    Maqola199512 iqtibos
    ABI

  5. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

    Jean-Paul Ryckaert, Giovanni Ciccotti, Herman J. C. Berendsen

    Maqola19779 iqtibos
    ABI

  6. AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules

    David A. Pearlman, David A. Case, James W. Caldwell +6

    Maqola19955 iqtibos
    ABI

  7. Force Fields for Protein Simulations

    Jay W. Ponder, David A. Case

    Sharh maqola20035 iqtibos
    ABI

  8. A smooth-particle mesh Ewald method for DL_POLY molecular dynamics simulation package on the Fujitsu VPP700

    Kholmirzo Kholmurodov, William R. Smith, Kenji Yasuoka +2

    Maqola20004 iqtibos
    ABI

  9. The Amber biomolecular simulation programs

    David A. Case, Thomas E. Cheatham, Tom Darden +7

    Maqola20054 iqtibos
    ABI

  10. MOLMOL: A program for display and analysis of macromolecular structures

    Reto Koradi, Martin Billeter, Kurt Wüthrich

    Maqola19963 iqtibos
    ABI

  11. RASMOL: biomolecular graphics for all

    Roger A. Sayle

    Maqola19953 iqtibos
    ABI

  12. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

    Wendy D. Cornell, Piotr Cieplak, Christopher I. Bayly +7

    Maqola19953 iqtibos
    ABI

  13. Crystal structure of DMA photolyase from Anacystis nidulans

    Taro Tamada, Kengo Kitadokoro, Yoshiki Higuchi +5

    Boshqa19973 iqtibos
    ABI

  14. Structure and Function of DNA Photolyase and Cryptochrome Blue-Light Photoreceptors

    Aziz Sancar

    Sharh maqola20033 iqtibos
    ABI

  15. Theoretical Study of Electron Transfer between the Photolyase Catalytic Cofactor FADH<sup>-</sup> and DNA Thymine Dimer

    Jens Antony, Dmitry M. Medvedev, Alexei A. Stuchebrukhov

    Maqola20003 iqtibos
    ABI

  16. Conformation of the Flavin Adenine Dinucleotide Cofactor FAD in DNA-Photolyase: A Molecular Dynamics Study

    Jutta Hahn, M.E. Michel‐Beyerle, Notker Rösch

    Maqola19983 iqtibos
    ABI

  17. Crystal Structure of DNA Photolyase from <i>Escherichia coli</i>

    Hee-Won Park, Sang‐Tae Kim, Aziz Sancar +1

    Maqola19953 iqtibos
    ABI

  18. Crystal Structure of a Photolyase Bound to a CPD-Like DNA Lesion After in Situ Repair

    Alexandra Mees, Tobias Klar, Petra Gnau +4

    Maqola20043 iqtibos
    ABI

  19. G Protein-coupled Receptors

    Ulrik Gether, Brian K. Kobilka

    Sharh maqola19982 iqtibos
    ABI

  20. Refined structure of glutathione reductase at 1.54 Å resolution

    P. Andrew Karplus, Georg E. Schulz

    Maqola19872 iqtibos
    ABI

  21. Quantum Chemical Study of the Electron-Transfer-Catalyzed Splitting of Oxetane and Azetidine Intermediates Proposed in the Photoenzymatic Repair of (6−4) Photoproducts of DNA

    Yinsheng Wang, Peter P. Gaspar, John‐Stephen Taylor

    Maqola20002 iqtibos
    ABI

  22. Ultrafast resonance energy transfer in bio-molecular systems

    Pramod Kumar Verma, Samir Kumar Pal

    Maqola20102 iqtibos
    ABI

  23. A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity

    Christopher P. Selby, Aziz Sancar

    Maqola20062 iqtibos
    ABI

  24. Dynamic Distance Disorder in Proteins Is Caused by Trapping

    Guobin Luo, Ioan Andricioaei, X. Sunney Xie +1

    Maqola20062 iqtibos
    ABI

  25. Molecular dynamics of rhodopsin and free opsin: Computer simulation

    Kholmirzo Kholmurodov, T. B. Feldman, М. А. Островский

    Maqola20072 iqtibos
    ABI