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Ish: Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.

  1. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    Maqola201274 iqtibos
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Maqola201469 iqtibos
    ABI

  3. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    Maqola201263 iqtibos
    ABI

  4. jModelTest 2: more models, new heuristics and parallel computing

    Diego Darriba, Guillermo L. Taboada, Ramón Doallo +1

    Boshqa201245 iqtibos
    ABI

  5. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Maqola202041 iqtibos
    ABI

  6. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

    Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio +4

    Maqola201737 iqtibos
    ABI

  7. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

    Kazutaka Katoh, John Rozewicki, Kazunori Yamada

    Maqola201729 iqtibos
    ABI

  8. REPuter: the manifold applications of repeat analysis on a genomic scale

    Stefan Kurtz

    Maqola200127 iqtibos
    ABI

  9. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Maqola200926 iqtibos
    ABI

  10. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    Maqola201525 iqtibos
    ABI

  11. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Maqola201925 iqtibos
    ABI

  12. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

    Maqola202123 iqtibos
    ABI

  13. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

    Matthias Meyer, Martin Kircher

    Maqola201021 iqtibos
    ABI

  14. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

    Susann Wicke, Gerald M. Schneeweiss, Claude W. dePamphilis +2

    Maqola201121 iqtibos
    ABI

  15. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    Maqola201218 iqtibos
    ABI

  16. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

    Marc Lohse, Oliver Drechsel, Sabine Kahlau +1

    Maqola201318 iqtibos
    ABI

  17. The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity

    Rafaël Govaerts, Eimear Nic Lughadha, Nicholas Black +2

    Maqola202118 iqtibos
    ABI

  18. Carpology of the species of <i>Ferula</i> subgen. <i>Merwia</i> (Umbelliferae–Apioideae) and some taxonomic implications

    Л.К. Сафина, Т. А. Остроумова, M. G. Pimenov

    Maqola201416 iqtibos
    ABI

  19. Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation

    Renata Kurzyna‐Młynik, Alexei A. Oskolski, Stephen R. Downie +3

    Maqola200816 iqtibos
    ABI

  20. Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +6

    Maqola201816 iqtibos
    ABI

  21. Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

    Aaron E. Darling, Bob Mau, Frederick R. Blattner +1

    Maqola200415 iqtibos
    ABI

  22. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

    Chang Liu, Linchun Shi, Yingjie Zhu +4

    Maqola201215 iqtibos
    ABI

  23. Ferula asafoetida : Traditional uses and pharmacological activity

    Poonam Mahendra, Shradha Bisht

    Maqola201215 iqtibos
    ABI

  24. Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

    Andan Zhu, Wenhu Guo, Sakshi Gupta +2

    Maqola201515 iqtibos
    ABI

  25. Phylogenetic relationships among <i>Dorema</i> , <i>Ferula</i> and <i>Leutea</i> (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +3

    Maqola201515 iqtibos
    ABI