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Ish: New insights into the molecular phylogeny and biogeographical history of Allium subgenus Melanocrommyum (Amaryllidaceae) based on plastome and nuclear sequences

  1. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    Maqola201274 iqtibos
    ABI

  2. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Maqola201370 iqtibos
    ABI

  3. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Maqola201469 iqtibos
    ABI

  4. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

    Matthew D. Kearse, Richard Moir, Amy Wilson +11

    Maqola201263 iqtibos
    ABI

  5. jModelTest 2: more models, new heuristics and parallel computing

    Diego Darriba, Guillermo L. Taboada, Ramón Doallo +1

    Boshqa201245 iqtibos
    ABI

  6. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Maqola202041 iqtibos
    ABI

  7. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Maqola200926 iqtibos
    ABI

  8. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

    Andrew Rambaut, Alexei J. Drummond, Dong Xie +2

    Maqola201818 iqtibos
    ABI

  9. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

    Remco Bouckaert, Timothy G. Vaughan, Joëlle Barido‐Sottani +22

    Maqola201910 iqtibos
    ABI

  10. Phylogeny and New Intrageneric Classification of Allium (Alliaceae) Based on Nuclear Ribosomal DNA ITS Sequences

    Nikolai Friesen, Reinhard Fritsch, Frank R. Blattner

    Maqola200610 iqtibos
    ABI

  11. Phylogenomics of Allium section Cepa (Amaryllidaceae) provides new insights on domestication of onion

    Ziyoviddin Yusupov, Tao Deng, Sergei Volis +4

    MaqolaGarlic and Onion StudiesPlant Diversity20207 iqtibos
    ABI

  12. RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

    Yan Yu, AJ Harris, Christopher Blair +1

    Maqola20157 iqtibos
    ABI

  13. Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China

    Qiao‐Qiao Li, Shou-Feng Zhou, Xinxin He +3

    Maqola20106 iqtibos
    ABI

  14. Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

    Richard H. Ree, Stephen A. Smith

    Maqola20086 iqtibos
    ABI

  15. Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

    Nicholas J. Matzke

    Maqola20146 iqtibos
    ABI

  16. "Complete chloroplast genomes of ten species from subgenus Allium (Allium, Amaryllidaceae) "

    Abdukhalimkhon Munavvarov, Ziyoviddin Yusupov, Ibrokhimjon Ergashov +3

    Maqola20225 iqtibos
    ABI

  17. NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

    Ravi K. Patel, Mukesh Jain

    Maqola20125 iqtibos
    ABI

  18. Seed macro- and micromorphology in <i>Allium</i> (Amaryllidaceae) and its phylogenetic significance

    Ziyoviddin Yusupov, Ibrokhimjon Ergashov, Sergei Volis +6

    MaqolaGarlic and Onion StudiesAnnals of Botany20224 iqtibos
    ABI

  19. Uplift, exhumation, and deformation in the Chinese Tian Shan

    Trevor A. Dumitru, Da Zhou, Edmund Z. Chang +4

    Bob20014 iqtibos
    ABI

  20. New classification of Allium L. subg. Melanocrommyum (Webb & Berthel.) Rouy (Alliaceae) based on molecular and morphological characters.

    Reinhard Fritsch, Frank R. Blattner, Maia Gurushidze

    Maqola20104 iqtibos
    ABI

  21. Bayesian Analysis of Biogeography when the Number of Areas is Large

    Michael J. Landis, Nicholas J. Matzke, Brian R. Moore +1

    Maqola20134 iqtibos
    ABI

  22. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

    Emmanuel Paradis, Klaus Schliep

    Maqola20184 iqtibos
    ABI

  23. Phylogenetic analysis of Allium subg. Melanocrommyum infers cryptic species and demands a new sectional classification

    Maia Gurushidze, Reinhard Fritsch, Frank R. Blattner

    Maqola20083 iqtibos
    ABI

  24. Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences

    Deng‐Feng Xie, Jin‐Bo Tan, Yan Yu +4

    Maqola20203 iqtibos
    ABI

  25. Taxonomy and phylogenetics of<i>Allium</i>section<i>Decipientia</i>(Amaryllidaceae): morphological characters do not reflect the evolutionary history revealed by molecular markers

    Nikolai Friesen, С. В. Смирнов, Mathias Leweke +2

    Maqola20213 iqtibos
    ABI