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Ish: Chromosome-level genome assembly of Albizia odoratissima and effect of flavonoid metabolic pathways under drought stress

Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour +18
Maqola201114 iqtibos
ABI
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Z. Yang
Maqola200711 iqtibos
ABI
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu +3
Maqola20157 iqtibos
ABI
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Todd M. Lowe, Sean R. Eddy
Maqola19977 iqtibos
ABI
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2
Maqola20217 iqtibos
ABI
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim, Ben Langmead, Steven L. Salzberg
Maqola20157 iqtibos
ABI
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Brian J. Haas, Steven L. Salzberg, Wei Zhu +6
Maqola20086 iqtibos
ABI
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Brian Haas
Maqola20036 iqtibos
ABI
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
Huaiyu Mi, Anushya Muruganujan, Dustin Ebert +2
Maqola20185 iqtibos
ABI
Proline: a multifunctional amino acid
László Szabados, Arnould Savouré
Sharh maqola20094 iqtibos
ABI
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
Shujun Ou, Ning Jiang
Maqola20174 iqtibos
ABI
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4
Maqola20174 iqtibos
ABI
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6
Maqola20224 iqtibos
ABI
Gene finding in novel genomes
Ian Korf
Maqola20043 iqtibos
ABI
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Zhigang Xu, Hao Wang
Maqola20073 iqtibos
ABI
The Pfam protein families database in 2019
Sara El-Gebali, Jaina Mistry, Alex Bateman +13
Maqola20183 iqtibos
ABI
Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding
Mario Stanke, Mark Diekhans, Robert Baertsch +1
Maqola20083 iqtibos
ABI
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki, Sean R. Eddy
Maqola20133 iqtibos
ABI
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6
Maqola20153 iqtibos
ABI
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton, Andrew Adey, Rupali P Patwardhan +3
Maqola20132 iqtibos
ABI
KEGG as a reference resource for gene and protein annotation
Minoru Kanehisa, Yoko Sato, Masayuki Kawashima +2
Maqola20152 iqtibos
ABI
Flavonoid-attracted <i>Aeromonas</i> sp. from the Arabidopsis root microbiome enhances plant dehydration resistance
Danxia He, Sunil Kumar Singh, Peng Li +8
Maqola20222 iqtibos
ABI
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David Emms, Steven Kelly
Maqola20152 iqtibos
ABI
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
Brigitte Boeckmann
Maqola20032 iqtibos
ABI
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths‐Jones
Maqola20052 iqtibos
ABI