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Ish: Population genetic structure of the gold-spotted pond frog (Pelophylax chosenicus) and its phylogenetic context within the genus Pelophylax

  1. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

    Fredrik Ronquist, Maxim Teslenko, Paul van der Mark +7

    Maqola201274 iqtibos
    ABI

  2. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Maqola201370 iqtibos
    ABI

  3. jModelTest 2: more models, new heuristics and parallel computing

    Diego Darriba, Guillermo L. Taboada, Ramón Doallo +1

    Boshqa201245 iqtibos
    ABI

  4. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

    Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio +4

    Maqola201737 iqtibos
    ABI

  5. Inference of Population Structure Using Multilocus Genotype Data

    Jonathan K. Pritchard, Matthew Stephens, Peter Donnelly

    Maqola200034 iqtibos
    ABI

  6. Detecting the number of clusters of individuals using the software <scp>structure</scp>: a simulation study

    Guillaume Evanno, Sébastien Regnaut, Jérôme Goudet

    Maqola200525 iqtibos
    ABI

  7. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    Maqola201724 iqtibos
    ABI

  8. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    Maqola202023 iqtibos
    ABI

  9. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

    Yoav Benjamini, Yosef Hochberg

    Maqola199520 iqtibos
    ABI

  10. <scp>genalex</scp> 6: genetic analysis in Excel. Population genetic software for teaching and research

    Rod Peakall, Peter E. Smouse

    Maqola200517 iqtibos
    ABI

  11. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

    Laurent Excoffier, Heidi E. L. Lischer

    Maqola201017 iqtibos
    ABI

  12. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update

    Rod Peakall, Peter E. Smouse

    Maqola201215 iqtibos
    ABI

  13. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

    Dent Earl, Bridgett M. vonHoldt

    Maqola201111 iqtibos
    ABI

  14. <scp>genepop</scp>’007: a complete re‐implementation of the<scp>genepop</scp>software for Windows and Linux

    François Rousset

    Maqola20079 iqtibos
    ABI

  15. <i>adegenet</i>: a R package for the multivariate analysis of genetic markers

    Thibaut Jombart

    Maqola20089 iqtibos
    ABI

  16. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

    Mattias Jakobsson, Noah A. Rosenberg

    Maqola20077 iqtibos
    ABI

  17. A measure of population subdivision based on microsatellite allele frequencies.

    Montgomery Slatkin

    Maqola19957 iqtibos
    ABI

  18. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

    Thibaut Jombart, Sébastien Devillard, François Balloux

    Maqola20107 iqtibos
    ABI

  19. A New Statistical Method for Haplotype Reconstruction from Population Data

    Matthew Stephens, Nicholas Smith, Peter Donnelly

    Maqola20015 iqtibos
    ABI

  20. <scp>popart</scp>: full‐feature software for haplotype network construction

    Jessica Leigh, David Bryant

    Maqola20155 iqtibos
    ABI

  21. MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing

    Sudhir Kumar, Glen Stecher, Michael Suleski +3

    Maqola20245 iqtibos
    ABI

  22. Ongoing declines for the world’s amphibians in the face of emerging threats

    Jennifer Luedtke, Janice Chanson, Kelsey Neam +97

    Maqola20234 iqtibos
    ABI

  23. Primer3—new capabilities and interfaces

    Andreas Untergasser, Ioana Cutcutache, Triinu Kõressaar +4

    Maqola20124 iqtibos
    ABI

  24. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)

    Thomas Thiel, W. Michalek, Rajeev K. Varshney +1

    Maqola20034 iqtibos
    ABI

  25. <scp>micro</scp>‐<scp>checker</scp>: software for identifying and correcting genotyping errors in microsatellite data

    Cock van Oosterhout, William F. Hutchinson, D. P. M. Wills +1

    Maqola20044 iqtibos
    ABI