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Ish: Molecular and morphological evidence support merging <i>Autumnalia</i> , <i>Fergania</i> , and <i>Kafirnigania</i> into <i>Ferula</i> (Apiaceae)

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  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

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  3. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

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  4. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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  5. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Maqola202047 iqtibos
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  6. ModelFinder: fast model selection for accurate phylogenetic estimates

    Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong +2

    Maqola201731 iqtibos
    ABI

  7. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

    Salvador Capella-Gutiérrez, José M. Silla-Martínez, Toni Gabaldón

    Maqola200929 iqtibos
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  8. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    Maqola201527 iqtibos
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  9. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Maqola201927 iqtibos
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  10. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

    Ivica Letunić, Peer Bork

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  11. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    Maqola201222 iqtibos
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  12. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

    Marc Lohse, Oliver Drechsel, Sabine Kahlau +1

    Maqola201319 iqtibos
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  13. Phylogenetic position of the genus Ferula (Apiaceae) and its placement in tribe Scandiceae as inferred from nrDNA ITS sequence variation

    Renata Kurzyna‐Młynik, Alexei A. Oskolski, Stephen R. Downie +3

    Maqola200819 iqtibos
    ABI

  14. Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +6

    Maqola201818 iqtibos
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  15. Phylogenetic relationships among <i>Dorema</i> , <i>Ferula</i> and <i>Leutea</i> (Apiaceae: Scandiceae: Ferulinae) inferred from nrDNA ITS and cpDNA noncoding sequences

    Mehrnoush Panahi, Łukasz Banasiak, Marcin Piwczyński +3

    Maqola201517 iqtibos
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  16. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

    Chang Liu, Linchun Shi, Yingjie Zhu +4

    Maqola201216 iqtibos
    ABI

  17. Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data

    Jun Wen, Deng‐Feng Xie, Megan Price +5

    Maqola202114 iqtibos
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  18. An updated tribal classification of Lamiaceae based on plastome phylogenomics

    Fei Zhao, Yaping Chen, Yasaman Salmaki +12

    Maqola202110 iqtibos
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  19. phytools: an R package for phylogenetic comparative biology (and other things)

    Liam J. Revell

    Maqola201110 iqtibos
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  20. Resolving the phylogenetic position of <i>Ombrocharis</i> (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae

    Yaping Chen, Bryan T. Drew, Bo Li +2

    Maqola20167 iqtibos
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  21. Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L.

    Lei Yang, Ozodbek Abduraimov, Komiljon Tojibaev +3

    MaqolaPlant chemical constituents analysisBMC Genomics20226 iqtibos
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  22. <i>Salvia</i> united: The greatest good for the greatest number

    Bryan T. Drew, Jesús Guadalupe González‐Gallegos, Chun‐Lei Xiang +4

    Maqola20176 iqtibos
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  23. Major clades within Apiaceae subfamily Apioideae as inferred by phylogenetic analysis of nrDNA ITS sequences

    Stephen R. Downie, Krzysztof Spalik, Deborah S. Katz‐Downie +1

    Maqola20105 iqtibos
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  24. Contrasting nuclear‐plastidial phylogenetic patterns in the recently diverged Iberian <i>Phlomis crinita</i> and <i>P. lychnitis</i> lineages (Lamiaceae)

    Rafael G. Albaladejo, Javier Aguilar, Abelardo Aparicio +1

    Maqola20055 iqtibos
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  25. Ribosomal ITS sequences and plant phylogenetic inference

    Inés Álvarez, Jonathan F. Wendel

    Sharh maqola20034 iqtibos
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