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The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. SchnableCenter for Carbon Capturing Crops, Iowa State University, Ames, IA 50011, USADoreen WareCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USARobert S. FultonThe Genome Center at Washington University, St. Louis, MO 63108, USAJoshua C. SteinCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAFusheng WeiArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAShiran PasternakCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAChengzhi LiangCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAJianwei ZhangArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USALucinda FultonThe Genome Center at Washington University, St. Louis, MO 63108, USATina GravesThe Genome Center at Washington University, St. Louis, MO 63108, USAPatrick MinxThe Genome Center at Washington University, St. Louis, MO 63108, USAAmy Denise ReilyThe Genome Center at Washington University, St. Louis, MO 63108, USALaura CourtneyThe Genome Center at Washington University, St. Louis, MO 63108, USAScott KruchowskiThe Genome Center at Washington University, St. Louis, MO 63108, USAChad TomlinsonThe Genome Center at Washington University, St. Louis, MO 63108, USACindy StrongThe Genome Center at Washington University, St. Louis, MO 63108, USAKim D. DelehauntyThe Genome Center at Washington University, St. Louis, MO 63108, USACatrina C. FronickThe Genome Center at Washington University, St. Louis, MO 63108, USABill CourtneyThe Genome Center at Washington University, St. Louis, MO 63108, USASusan M. RockThe Genome Center at Washington University, St. Louis, MO 63108, USAEddie BelterThe Genome Center at Washington University, St. Louis, MO 63108, USAFeiyu DuThe Genome Center at Washington University, St. Louis, MO 63108, USAKyung KimThe Genome Center at Washington University, St. Louis, MO 63108, USARachel M. AbbottThe Genome Center at Washington University, St. Louis, MO 63108, USAMarc CottonThe Genome Center at Washington University, St. Louis, MO 63108, USAAndy LevyThe Genome Center at Washington University, St. Louis, MO 63108, USAPamela MarchettoThe Genome Center at Washington University, St. Louis, MO 63108, USAKerri OchoaThe Genome Center at Washington University, St. Louis, MO 63108, USAStephanie JacksonThe Genome Center at Washington University, St. Louis, MO 63108, USABarbara GillamThe Genome Center at Washington University, St. Louis, MO 63108, USAWeizu ChenThe Genome Center at Washington University, St. Louis, MO 63108, USALe YanThe Genome Center at Washington University, St. Louis, MO 63108, USAJamey HigginbothamThe Genome Center at Washington University, St. Louis, MO 63108, USAMarco CardenasThe Genome Center at Washington University, St. Louis, MO 63108, USAJason WaligorskiThe Genome Center at Washington University, St. Louis, MO 63108, USAElizabeth ApplebaumThe Genome Center at Washington University, St. Louis, MO 63108, USALindsey PhelpsThe Genome Center at Washington University, St. Louis, MO 63108, USAJason FalconeThe Genome Center at Washington University, St. Louis, MO 63108, USAKrishna KanchiThe Genome Center at Washington University, St. Louis, MO 63108, USAThynn ThaneThe Genome Center at Washington University, St. Louis, MO 63108, USAAdam ScimoneThe Genome Center at Washington University, St. Louis, MO 63108, USANay ThaneThe Genome Center at Washington University, St. Louis, MO 63108, USAJessica HenkeThe Genome Center at Washington University, St. Louis, MO 63108, USATom WangThe Genome Center at Washington University, St. Louis, MO 63108, USAJessica RuppertThe Genome Center at Washington University, St. Louis, MO 63108, USANeha ShahThe Genome Center at Washington University, St. Louis, MO 63108, USAKelsi RotterThe Genome Center at Washington University, St. Louis, MO 63108, USAJennifer HodgesThe Genome Center at Washington University, St. Louis, MO 63108, USAElizabeth IngenthronThe Genome Center at Washington University, St. Louis, MO 63108, USAM. CordesThe Genome Center at Washington University, St. Louis, MO 63108, USASara KohlbergThe Genome Center at Washington University, St. Louis, MO 63108, USAJennifer SgroThe Genome Center at Washington University, St. Louis, MO 63108, USABrandon DelgadoThe Genome Center at Washington University, St. Louis, MO 63108, USAKelly MeadThe Genome Center at Washington University, St. Louis, MO 63108, USAAsif ChinwallaThe Genome Center at Washington University, St. Louis, MO 63108, USAShawn LeonardThe Genome Center at Washington University, St. Louis, MO 63108, USAKevin CrouseThe Genome Center at Washington University, St. Louis, MO 63108, USAKristi ColluraArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USADave KudrnaArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAJennifer CurrieArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USARuifeng HeArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAAngelina AngelovaArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAShanmugam RajasekarArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USATeri MuellerArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USARene LomeliArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAGabriel ScaraArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAAra KoArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAKrista DelaneyArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAMarina WissotskiArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAGeorgina Espinosa LópezArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USADavid CamposArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAMichele BraidottiArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAElizabeth AshleyArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAWolfgang GolserArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAHye‐Ran KimArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USASeunghee LeeArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAJinke LinArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAZeljko DujmicArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAWoojin KimArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAJayson TalagArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAAndrea ZuccoloArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAChuanzhu FanArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAAswathy SebastianArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USAMelissa KramerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USALori SpiegelCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USALidia U. NascimentoCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USATheresa ZutavernCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USABeth A. MillerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAClaude AmbroiseCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAStéphanie MullerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAWill SpoonerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAApurva NarechaniaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USALiya RenCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USASharon WeiCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USASunita KumariCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USABen FagaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAMichael J. LevyCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USALinda McMahanCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAPeter Van BurenCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USAMatthew VaughnCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
2009en
ABI

Annotatsiya

A-Maize-ing Maize is one of our oldest and most important crops, having been domesticated approximately 9000 years ago in central Mexico. Schnable et al. (p. 1112 ; see the cover) present the results of sequencing the B73 inbred maize line. The findings elucidate how maize became diploid after an ancestral doubling of its chromosomes and reveals transposable element movement and activity and recombination. Vielle-Calzada et al. (p. 1078 ) have sequenced the Palomero Toluqueño ( Palomero ) landrace, a highland popcorn from Mexico, which, when compared to the B73 line, reveals multiple loci impacted by domestication. Swanson-Wagner et al. (p. 1118 ) exploit possession of the genome to analyze expression differences occurring between lines. The identification of single nucleotide polymorphisms and copy number variations among lines was used by Gore et al. (p. 1115 ) to generate a Haplotype map of maize. While chromosomal diversity in maize is high, it is likely that recombination is the major force affecting the levels of heterozygosity in maize. The availability of the maize genome will help to guide future agricultural and biofuel applications (see the Perspective by Feuillet and Eversole ).

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