A communal catalogue reveals Earth’s multiscale microbial diversity
Luke ThompsonDepartment of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, Mississippi, USAJon G. SandersDepartment of Pediatrics, University of California San Diego, La Jolla, California, USADaniel McDonaldDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAAmnon AmirDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAJoshua LadauThe Gladstone Institutes and University of California San Francisco, San Francisco, California, USAKenneth J. LoceyDepartment of Biology, Indiana University, Bloomington, Indiana, USARobert J. PrillIndustrial and Applied Genomics, IBM Almaden Research Center, San Jose, California, USAAnupriya TripathiDepartment of Pediatrics, University of California San Diego, La Jolla, California, USASean M. GibbonsDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USAGail AckermannDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAJosé A. Navas-MolinaDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USAStefan JanssenDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAEvguenia KopylovaDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAYoshiki Vázquez‐BaezaDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USAAntonio GonzálezDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAJames T. MortonDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USASiavash MirarabDepartment of Electrical and Computer Engineering, University of California San Diego, La Jolla, California, USAZhenjiang Zech XuDepartment of Pediatrics, University of California San Diego, La Jolla, California, USALingjing JiangDepartment of Family Medicine and Public Health, University of California San Diego, La Jolla, California, USAMohamed Fauzi HaroonDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USAJad KanbarDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAQiyun ZhuDepartment of Pediatrics, University of California San Diego, La Jolla, California, USASe Jin SongDepartment of Pediatrics, University of California San Diego, La Jolla, California, USATomasz KościółekDepartment of Pediatrics, University of California San Diego, La Jolla, California, USANicholas A. BokulichPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USAJoshua LeflerDepartment of Pediatrics, University of California San Diego, La Jolla, California, USAColin BrislawnEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USAGregory HumphreyDepartment of Pediatrics, University of California San Diego, La Jolla, California, USASarah M. OwensBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USAJarrad Hampton‐MarcellBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USADonna Berg-LyonsBioFrontiers Institute, University of Colorado, Boulder, Colorado, USAValerie J. McKenzieDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USANoah FiererCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, Colorado, USAJed A. FuhrmanDepartment of Biological Sciences, University of Southern California, Los Angeles, California, USAAaron ClausetBioFrontiers Institute, University of Colorado, Boulder, Colorado, USARick StevensComputing, Environment and Life Sciences, Argonne National Laboratory, Argonne, Illinois, USAAshley ShadeDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USAKatherine S. PollardThe Gladstone Institutes and University of California San Francisco, San Francisco, California, USAKelly D. GoodwinOcean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, stationed at Southwest Fisheries Science Center, La Jolla, California, USAJanet JanssonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USAJack A. GilbertBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USARob KnightCenter for Microbiome Innovation, University of California San Diego, La Jolla, California, USAJose L. Agosto RiveraUniversity of Puerto Rico, San Juan, Puerto Rico, USALisa Al-MoosawiPlymouth Marine Laboratory, Plymouth, England, UKJohn C. AlverdyUniversity of Chicago, Chicago, Illinois, USAKatherine R. AmatoNorthwestern University, Evanston, Illinois, USAJason AndrasMount Holyoke College, South Hadley, Massachusetts, USALargus T. AngenentCornell University, Ithaca, New York, USADionysios A. AntonopoulosArgonne National Laboratory, Argonne, Illinois, USAAmy ApprillWoods Hole Oceanographic Institution, Woods Hole, Massachusetts, USADavid ArmitageUniversity of California Berkeley, Berkeley, California, USAKate A. BallantineMount Holyoke College, South Hadley, Massachusetts, USAJiří BártaUniversity of South Bohemia, Cˇeské Bude˘jovice, Czech RepublicJulia K. BaumUniversity of Victoria, Victoria, British Columbia, CanadaAllison BerryUniversity of California Davis, Davis, California, USAAshish BhatnagarMaharshi Dayanand Saraswati University, Ajmer, IndiaMonica BhatnagarMaharshi Dayanand Saraswati University, Ajmer, IndiaJennifer F. BiddleUniversity of Delaware, Newark, Delaware, USALucie BittnerUniversité Pierre et Marie Curie, Evolution Paris Seine, Paris, FranceBazartseren BoldgivNational University of Mongolia, Ulaanbaatar, MongoliaEric BottosPacific Northwest National Laboratory, Richland, Washington, USADonal M. BoyerWildlife Conservation Society and Bronx Zoo, New York, New York, USAJosephine BraunSan Diego Zoo Institute for Conservation Research, Escondido, California, USAWilliam J. BrazeltonUniversity of Utah, Salt Lake City, Utah, USAFrancis Q. BrearleyManchester Metropolitan University, Manchester, UKAlexandra H. CampbellUniversity of New South Wales, Sydney, New South Wales, AustraliaJ. Gregory CaporasoNorthern Arizona University, Flagstaff, Arizona, USACésar CardonaUniversity of Chicago, Chicago, Illinois, USAJoLynn CarrollUiT-The Arctic University of Norway, Tromsø, NorwayS. Craig CaryUniversity of Waikato, Hamilton, New ZealandBrenda B. CasperUniversity of Pennsylvania, Philadelphia, Pennsylvania, USATrevor C. CharlesUniversity of Waterloo, Waterloo, Ontario, CanadaHaiyan ChuInstitute of Soil Science, Chinese Academy of Sciences, Nanjing, ChinaDanielle C. ClaarUniversity of Victoria, Victoria, British Columbia, CanadaRobert G. ClarkEnvironment and Climate Change Canada, Saskatoon, CanadaJonathan B. ClaytonGreenViet Biodiversity Conservation Center, Da Nang, Viet NamJosé C. ClementeIcahn School of Medicine at Mount Sinai, New York, New York, USAAlyssa T. CochranColorado State University, Fort Collins, Colorado, USAMaureen L. ColemanUniversity of Chicago, Chicago, Illinois, USAGavin CollinsNational University of Ireland, Galway, IrelandRita R. ColwellUniversity of Maryland, College Park, Maryland, USAMónica ContrerasInstituto Venezolano de Investigaciones Cientificas (IVIC), VenezuelaBenjamin B. CraryUniversity of Wisconsin, Madison, Wisconsin, USASimon CreerBangor University, Bangor, Gwynedd, UKDaniel A. CristolCollege of William and Mary, Williamsburg, Virginia, USAByron C. CrumpOregon State University, Corvallis, Oregon, USADuoying CuiSarah E. DalyPurdue University, West Lafayette, Indiana, USALiliana M. DávalosStony Brook University, Stony Brook, New York, USARussell D. DawsonUniversity of Northern British Columbia, Prince George, British, Columbia, CanadaJennifer R. DeFazioUniversity of Chicago, Chicago, Illinois, USAFrédéric DelsucUniversité de Montpellier, CNRS, Montpellier, FranceHebe M. DionisiCentro para el Estudio de Sistemas Marinos (CESIMAR-CONICET), CCT CENPAT, Puerto Madryn, Chubut, ArgentinaMaria Gloria Domínguez-BelloNew York University, New York, New York, USARobin D. DowellUniversity of Colorado, Boulder, Colorado, USAEric A. DubinskyLawrence Berkeley National Laboratory, Berkeley, California, USAPeter O. DunnUniversity of Wisconsin, Milwaukee, Wisconsin, USADanilo ErcoliniUniversity of Naples Federico II, Naples, ItalyRobert E. EspinozaCalifornia State University, Northridge, California, USAVanessa O. EzenwaUniversity of Georgia, Athens, Georgia, USA
2017en
ABI
Annotatsiya
Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes comparisons among studies, hindering the development of global inferences about microbial life on Earth. Here we present a meta-analysis of microbial community samples collected by hundreds of researchers for the Earth Microbiome Project. Coordinated protocols and new analytical methods, particularly the use of exact sequences instead of clustered operational taxonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multiple studies and allow us to explore patterns of diversity at an unprecedented scale. The result is both a reference database giving global context to DNA sequence data and a framework for incorporating data from future studies, fostering increasingly complete characterization of Earth's microbial diversity.
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