Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. BowersDepartment of Energy Joint Genome Institute, Walnut Creek, California, USANikos C. KyrpidesDepartment of Energy Joint Genome Institute, Walnut Creek, California, USARamūnas StepanauskasBigelow Laboratory for Ocean Sciences, East Boothbay, Maine, USAMiranda Harmon‐SmithDepartment of Energy Joint Genome Institute, Walnut Creek, California, USADevin F. R. DoudDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAT. B. K. ReddyDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAFrederik SchulzDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAJessica K. JarettDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAAdam R. RiversDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAEmiley A. Eloe‐FadroshDepartment of Energy Joint Genome Institute, Walnut Creek, California, USASusannah G. TringeDepartment of Energy Joint Genome Institute, Walnut Creek, California, USANatalia IvanovaDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAAlex CopelandDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAAlicia ClumDepartment of Energy Joint Genome Institute, Walnut Creek, California, USAEric D. BecraftBigelow Laboratory for Ocean Sciences, East Boothbay, Maine, USARex R. MalmstromDepartment of Energy Joint Genome Institute, Walnut Creek, California, USABruce W. BirrenBroad Institute, Cambridge, Massachusetts, USAMircea PodarBiosciences Division, Oak Ridge National Laboratory, Oakridge Tennessee, USAPeer BorkStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, GermanyGeorge M. WeinstockThe Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, USAGeorge M GarrityDepartment of Microbiology &Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, Michigan, USAJeremy A. DodsworthDepartment of Biology, California State University, San Bernardino, California, USAShibu YoosephJ. Craig Venter Institute, San Diego, California, USAGranger SuttonJ. Craig Venter Institute, Rockville, Maryland, USAFrank Oliver GlöcknerMicrobial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, GermanyJack A. GilbertBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USAWilliam NelsonBiological Sciences Division, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USASteven HallamDepartment of Microbiology &Immunology, University of British Columbia, Vancouver, British Columbia, CanadaSean P. JungbluthCenter for Dark Energy Biosphere Investigation, University of Southern California, Los Angeles, California, USAThijs J. G. EttemaDepartment of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Uppsala, SwedenScott TigheAdvanced Genomics Lab, University of Vermont Cancer Center, Burlington Vermont, USAKonstantinos T. KonstantinidisGeorgia Institute of Technology, School of Civil and Environmental Engineering, Atlanta, Georgia, USAWen‐Tso LiuDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USABrett J. BakerThomas RatteiDepartment of Microbiology and Ecosystem Science, University of Vienna, Vienna, AustriaJonathan A. EisenGenome Center, University of California, Davis, California, USABrian P. HedlundNevada Institute of Personalized Medicine, University of Nevada Las Vegas, Las Vegas, Nevada, USAKatherine D. McMahonDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USANoah FiererCooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, Colorado, USARob KnightCenter for Microbiome Innovation, and Departments of Pediatrics and Computer Science &Engineering, University of California San Diego, La Jolla, California, USAROBERT FINNEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Welcome Trust Genome Campus, Hinxton, Cambridge, UKGuy CochraneEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Welcome Trust Genome Campus, Hinxton, Cambridge, UKIlene Karsch‐MizrachiNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USAGene W TysonAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, AustraliaChristian RinkeAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, AustraliaAlla LapidusCentre for Algorithmic Biotechnology, ITBM, St. Petersburg State University, St. Petersburg, RussiaFolker MeyerBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USAPelin YilmazMicrobial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, GermanyDonovan H. ParksAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, AustraliaA. Murat ErenKnapp Center for Biomedical Discovery, Chicago, Illinois, USALynn M. SchrimlNational Cancer Institute, Frederick, Maryland, USAJillian F. BanfieldDepartment of Earth and Planetary Science, University of California, Berkeley, California, USAPhilip HugenholtzAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland, AustraliaTanja WoykeDepartment of Energy Joint Genome Institute, Walnut Creek, California, USA
2017en
ABI
Annotatsiya
We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.
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