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Works cited by this work

91 works

Work: Complete sequence and comparative analysis of the mitochondrial genome of the rare and endangered Clematis acerifolia, the first clematis mitogenome to provide new insights into the phylogenetic evolutionary status of the genus

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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  2. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

    Sudhir Kumar, Glen Stecher, Koichiro Tamura

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  3. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Article202041 citations
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  4. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

    Kazutaka Katoh, John Rozewicki, Kazunori Yamada

    Article201729 citations
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  5. REPuter: the manifold applications of repeat analysis on a genomic scale

    Stefan Kurtz

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  6. Bandage: interactive visualization of <i>de novo</i> genome assemblies

    Ryan R. Wick, Mark B. Schultz, Justin Zobel +1

    Article201525 citations
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  7. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

    Dong Zhang, Fangluan Gao, Ivan Jakovlić +4

    Article201925 citations
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  8. Trimmomatic: a flexible trimmer for Illumina sequence data

    Anthony Bolger, Marc Lohse, Björn Usadel

    Article201423 citations
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  9. Fast and accurate short read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    Article200921 citations
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  10. MISA-web: a web server for microsatellite prediction

    Sebastian Beier, Thomas Thiel, Thomas A. Münch +2

    Article201717 citations
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  11. MRBAYES: Bayesian inference of phylogenetic trees

    John P. Huelsenbeck, Fredrik Ronquist

    Article200116 citations
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  12. Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

    Aaron E. Darling, Bob Mau, Frederick R. Blattner +1

    Article200415 citations
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  13. Tandem repeats finder: a program to analyze DNA sequences

    Gary Benson

    Article199910 citations
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  14. GeSeq – versatile and accurate annotation of organelle genomes

    Michael Tillich, Pascal Lehwark, Tommaso Pellizzer +4

    Article20179 citations
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  15. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

    Yupeng Wang, Haibao Tang, Jeremy D. DeBarry +9

    Article20127 citations
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  16. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

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  17. Chloroplast genomes: diversity, evolution, and applications in genetic engineering

    Henry Daniell, Choun‐Sea Lin, Ming Yu +1

    Review article20166 citations
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  18. CPGAVAS2, an integrated plastome sequence annotator and analyzer

    Linchun Shi, Haimei Chen, Mei Jiang +4

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  19. Interactive Tree Of Life (iTOL) v4: recent updates and new developments

    Ivica Letunić, Peer Bork

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  20. Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

    Rita Gemayel, Marcelo D. Vinces, Matthieu Legendre +1

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  21. Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

    Vadim Goremykin, Francesco Salamini, Riccardo Velasco +1

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  22. High speed BLASTN: an accelerated MegaBLAST search tool

    Ying Chen, Weicai Ye, Yongdong Zhang +1

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  23. Angiosperm mitochondrial genomes and mutations

    Tomohiko Kubo, Kathleen J. Newton

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  24. RCircos: an R package for Circos 2D track plots

    Hongen Zhang, Paul S. Meltzer, Sean Davis

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  25. Apollo: a sequence annotation editor

    SE Lewis, SMJ Searle, Nomi L. Harris +16

    Review article20022 citations
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