Работы, на которые ссылается эта работа

Работ: 59

Работа: Chromosome-level genome assembly of Albizia odoratissima and effect of flavonoid metabolic pathways under drought stress

Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour +18
Статья2011Цитирований: 14
ABI
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Z. Yang
Статья2007Цитирований: 11
ABI
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu +3
Статья2015Цитирований: 7
ABI
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Todd M. Lowe, Sean R. Eddy
Статья1997Цитирований: 7
ABI
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2
Статья2021Цитирований: 7
ABI
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim, Ben Langmead, Steven L. Salzberg
Статья2015Цитирований: 7
ABI
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Brian J. Haas, Steven L. Salzberg, Wei Zhu +6
Статья2008Цитирований: 6
ABI
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Brian Haas
Статья2003Цитирований: 6
ABI
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
Huaiyu Mi, Anushya Muruganujan, Dustin Ebert +2
Статья2018Цитирований: 5
ABI
Proline: a multifunctional amino acid
László Szabados, Arnould Savouré
Обзорная статья2009Цитирований: 4
ABI
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
Shujun Ou, Ning Jiang
Статья2017Цитирований: 4
ABI
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4
Статья2017Цитирований: 4
ABI
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6
Статья2022Цитирований: 4
ABI
Gene finding in novel genomes
Ian Korf
Статья2004Цитирований: 3
ABI
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Zhigang Xu, Hao Wang
Статья2007Цитирований: 3
ABI
The Pfam protein families database in 2019
Sara El-Gebali, Jaina Mistry, Alex Bateman +13
Статья2018Цитирований: 3
ABI
Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding
Mario Stanke, Mark Diekhans, Robert Baertsch +1
Статья2008Цитирований: 3
ABI
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki, Sean R. Eddy
Статья2013Цитирований: 3
ABI
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6
Статья2015Цитирований: 3
ABI
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton, Andrew Adey, Rupali P Patwardhan +3
Статья2013Цитирований: 2
ABI
KEGG as a reference resource for gene and protein annotation
Minoru Kanehisa, Yoko Sato, Masayuki Kawashima +2
Статья2015Цитирований: 2
ABI
Flavonoid-attracted <i>Aeromonas</i> sp. from the Arabidopsis root microbiome enhances plant dehydration resistance
Danxia He, Sunil Kumar Singh, Peng Li +8
Статья2022Цитирований: 2
ABI
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David Emms, Steven Kelly
Статья2015Цитирований: 2
ABI
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
Brigitte Boeckmann
Статья2003Цитирований: 2
ABI
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths‐Jones
Статья2005Цитирований: 2
ABI