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Иш: The genomic and bulked segregant analysis of Curcuma alismatifolia revealed its diverse bract pigmentation

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    Мақола201370 иқтибос
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    Мақола201469 иқтибос
    ABI

  3. Fast and accurate short read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    Мақола200921 иқтибос
    ABI

  4. fastp: an ultra-fast all-in-one FASTQ preprocessor

    Shifu Chen, Yanqing Zhou, Yaru Chen +1

    Мақола201818 иқтибос
    ABI

  5. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    Мақола201414 иқтибос
    ABI

  6. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Мақола201114 иқтибос
    ABI

  7. Fast gapped-read alignment with Bowtie 2

    Ben Langmead, Steven L. Salzberg

    Мақола201211 иқтибос
    ABI

  8. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Мақола200711 иқтибос
    ABI

  9. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

    Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2

    Мақола201510 иқтибос
    ABI

  10. WGCNA: an R package for weighted correlation network analysis

    Peter Langfelder, Steve Horvath

    Мақола20089 иқтибос
    ABI

  11. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

    Mihaela Pertea, Daehwan Kim, Geo Pertea +2

    Мақола20168 иқтибос
    ABI

  12. Fast and accurate long-read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    Мақола20107 иқтибос
    ABI

  13. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

    Daehwan Kim, Joseph M. Paggi, Chanhee Park +2

    Мақола20197 иқтибос
    ABI

  14. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Мақола20217 иқтибос
    ABI

  15. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    Мақола20086 иқтибос
    ABI

  16. Flavonoids: biosynthesis, biological functions, and biotechnological applications

    Marı́a Lorena Falcone Ferreyra, Sebastián P. Rius, Paula Casati

    Мақола20126 иқтибос
    ABI

  17. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    Мақола20116 иқтибос
    ABI

  18. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Мақола20036 иқтибос
    ABI

  19. MYB transcription factors in Arabidopsis

    Christian Dubos, Ralf Stracke, Erich Grotewold +3

    Шарҳ мақола20105 иқтибос
    ABI

  20. <tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

    Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

    Мақола20095 иқтибос
    ABI

  21. A framework for variation discovery and genotyping using next-generation DNA sequencing data

    Mark A. DePristo, Eric Banks, Ryan Poplin +15

    Мақола20114 иқтибос
    ABI

  22. Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

    Xin Qiao, Qionghou Li, Hao Yin +5

    Мақола20194 иқтибос
    ABI

  23. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    Мақола20174 иқтибос
    ABI

  24. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4

    Мақола20174 иқтибос
    ABI

  25. Gene finding in novel genomes

    Ian Korf

    Мақола20043 иқтибос
    ABI