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Ушбу иш иқтибос қилган ишлар

63 та иш

Иш: Whole genome sequencing of Castanea mollissima and molecular mechanisms of sugar and starch synthesis

  1. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    Мақола202041 иқтибос
    ABI

  2. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    Мақола201414 иқтибос
    ABI

  3. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    Мақола201114 иқтибос
    ABI

  4. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    Мақола200711 иқтибос
    ABI

  5. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

    Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2

    Мақола201510 иқтибос
    ABI

  6. WGCNA: an R package for weighted correlation network analysis

    Peter Langfelder, Steve Horvath

    Мақола20089 иқтибос
    ABI

  7. clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

    Guangchuang Yu, Li-Gen Wang, Yanyan Han +1

    Мақола20128 иқтибос
    ABI

  8. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    Мақола20157 иқтибос
    ABI

  9. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    Мақола20127 иқтибос
    ABI

  10. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

    Yupeng Wang, Haibao Tang, Jeremy D. DeBarry +9

    Мақола20127 иқтибос
    ABI

  11. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    Мақола19977 иқтибос
    ABI

  12. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    Мақола20217 иқтибос
    ABI

  13. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Мақола20157 иқтибос
    ABI

  14. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    Мақола20086 иқтибос
    ABI

  15. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    Мақола20036 иқтибос
    ABI

  16. Minimap2: pairwise alignment for nucleotide sequences

    Heng Li

    Мақола20185 иқтибос
    ABI

  17. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

    Heng Li

    Препринт20135 иқтибос
    ABI

  18. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Мақола20174 иқтибос
    ABI

  19. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

    Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6

    Мақола20224 иқтибос
    ABI

  20. DNA sequencing with chain-terminating inhibitors

    Frederick Sanger, S. Nicklen, Alan Coulson

    Мақола19774 иқтибос
    ABI

  21. NextPolish: a fast and efficient genome polishing tool for long-read assembly

    Jiang Hu, Junpeng Fan, Zongyi Sun +1

    Мақола20193 иқтибос
    ABI

  22. Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding

    Mario Stanke, Mark Diekhans, Robert Baertsch +1

    Мақола20083 иқтибос
    ABI

  23. Hybrid <i>de novo</i> genome assembly of Chinese chestnut (<i>Castanea mollissima</i>)

    Yu Xing, Yang Liu, Qing Zhang +10

    Мақола20193 иқтибос
    ABI

  24. Coming of age: ten years of next-generation sequencing technologies

    Sara Goodwin, John D. McPherson, W. Richard McCombie

    Шарҳ мақола20163 иқтибос
    ABI

  25. Сарлавҳасиз

    Бошқа2 иқтибос
    ABI