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Steven L. Salzberg

16 ta ish

Johns Hopkins University

AkademScholarda batafsil koʻrsatkichlar

  1. Fast gapped-read alignment with Bowtie 2

    Ben Langmead, Steven L. Salzberg

    MaqolaOchiq kirish201214 iqtibos
    ABI

  2. FLASH: fast length adjustment of short reads to improve genome assemblies

    Tanja Magoč, Steven L. Salzberg

    MaqolaOchiq kirish201112 iqtibos
    ABI

  3. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

    Daehwan Kim, Joseph M. Paggi, Chanhee Park +2

    MaqolaOchiq kirish20199 iqtibos
    ABI

  4. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

    Mihaela Pertea, Daehwan Kim, Geo Pertea +2

    MaqolaOchiq kirish20168 iqtibos
    ABI

  5. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    MaqolaOchiq kirish20158 iqtibos
    ABI

  6. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    MaqolaOchiq kirish20087 iqtibos
    ABI

  7. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Maqola20157 iqtibos
    ABI

  8. Bracken: estimating species abundance in metagenomics data

    Jennifer Lu, Florian P. Breitwieser, Peter Thielen +1

    MaqolaOchiq kirish20173 iqtibos
    ABI

  9. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

    Cole Trapnell, Brian A. Williams, Geo Pertea +6

    Maqola20103 iqtibos
    ABI

  10. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

    Cole Trapnell, Adam Roberts, Loyal A. Goff +7

    MaqolaOchiq kirish20122 iqtibos
    ABI

  11. The tuatara genome reveals ancient features of amniote evolution

    Neil J. Gemmell, Kim Rutherford, Stefan Prost +63

    MaqolaOchiq kirish20202 iqtibos
    ABI

  12. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

    Ben Langmead, Cole Trapnell, Mihai Pop +1

    MaqolaOchiq kirish20092 iqtibos
    ABI

  13. Transcriptome assembly from long-read RNA-seq alignments with StringTie2

    Sam Kovaka, Aleksey V. Zimin, Geo Pertea +3

    MaqolaOchiq kirish20192 iqtibos
    ABI

  14. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

    Daehwan Kim, Geo Pertea, Cole Trapnell +3

    Maqola20132 iqtibos
    ABI

  15. Programs for Machine Learning

    Steven L. Salzberg, Alberto M. Segre

    Maqola19942 iqtibos
    ABI

  16. Kraken: ultrafast metagenomic sequence classification using exact alignments

    Derrick E. Wood, Steven L. Salzberg

    Maqola20142 iqtibos
    ABI